DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and rct1

DIOPT Version :9

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_595894.1 Gene:rct1 / 2539942 PomBaseID:SPBC17G9.05 Length:432 Species:Schizosaccharomyces pombe


Alignment Length:466 Identity:215/466 - (46%)
Similarity:295/466 - (63%) Gaps:51/466 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFIAQTGDPSG-AGDGGS 64
            |||:||||:|||.:|||:.|.|..|.||||||:||||||..|:.:|..:..|||||.| .||||.
pombe     1 MSVLIETTVGDLVIDLFVKEAPKTCENFLKLCKLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGR 65

  Fly    65 SIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSA------GKNLV-GSQFFLTLGENLTSLDGN 122
            .:|.|: ....|||:|||.|.:.|:..|::|:.:|      .|.|| ||||.:||.:||..||..
pombe    66 CVWNVL-NKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEGLDER 129

  Fly   123 HCVIGEVVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLK 187
            :.:.|:|.||.:.|.|:||||.|:..:||:||||.||::|:|||.:|..|..|.|||||:.|:|.
pombe   130 YPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIKHTIILDDPFEDPPDLVEPLRSPSPTPEQLA 194

  Fly   188 NGRIAADEDIDDTDGMTAEEMQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPVTT 252
            ..||..:|.|:..   |:|:..:...|.||:|.|..||::||||.|.:||||||||||||||||.
pombe   195 TVRIGENEQIESE---TSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQ 256

  Fly   253 DDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIHVDFSQ 317
            |:|||:|||.||.:..|:||||::|||||||||:||::::|.|.|||||.||||||.||||||||
pombe   257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQ 321

  Fly   318 SVSKVTWRGKGRGIEGDYRKLDFNNLRDDKDHRKPNNGRSRTEDHKERNRTEDFRNRMSS----- 377
            ||::             ||:. :|:.||    ||.::.||   |.:|.:|..|.|...|:     
pombe   322 SVAR-------------YRQY-YNSNRD----RKRSSSRS---DDREYHRRSDGRYDRSNYRDDY 365

  Fly   378 AERRKAREQRHQEQSERDVRKNLQRRTRSKEKDEKSVYRSKKSQNES----VRENSNRERNRNEK 438
            ..|||.|:.|..:.|.|:      .|..:...|::|.::.:.:.|::    :|:.|...|.|.::
pombe   366 RHRRKERDHRDDQSSFRN------ERFSNYYGDDRSYHKRRNTGNKNCDDHLRDKSPERRYRYDR 424

  Fly   439 RSSRSRDATHR 449
               |.||..:|
pombe   425 ---RYRDDRYR 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 86/172 (50%)
RRM <237..445 CDD:223796 94/216 (44%)
RRM_PPIL4 237..319 CDD:240681 61/81 (75%)
rct1NP_595894.1 cyclophilin_RRM 4..176 CDD:238902 86/172 (50%)
RRM 151..417 CDD:223796 133/295 (45%)
RRM_PPIL4 241..323 CDD:240681 61/81 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 160 1.000 Domainoid score I984
eggNOG 1 0.900 - - E1_COG0652
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12126
Inparanoid 1 1.050 369 1.000 Inparanoid score I443
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005630
OrthoInspector 1 1.000 - - oto101072
orthoMCL 1 0.900 - - OOG6_102469
Panther 1 1.100 - - LDO PTHR45843
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R965
SonicParanoid 1 1.000 - - X4034
TreeFam 1 0.960 - -
1312.850

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