DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and cyn-9

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_497745.1 Gene:cyn-9 / 175471 WormBaseID:WBGene00000885 Length:309 Species:Caenorhabditis elegans


Alignment Length:465 Identity:97/465 - (20%)
Similarity:151/465 - (32%) Gaps:200/465 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VIETTMGDLTVDLFISERPIACLNFLKLC------------RLKYYNFNLFHTVQQGFIAQTGD- 55
            |.|..:|.:.:.||:.:.|..|.||..||            || :|..|.||.:.:.|:.|.|| 
 Worm    13 VDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARL-HYKQNEFHRIVKKFMIQGGDI 76

  Fly    56 PSGAGDGGSSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLD 120
            ..|.|.||.||:|       |:|:.|.. |:.||...:||:.:.|.|...||||:|... ....:
 Worm    77 TEGDGRGGFSIYG-------RYFDDEKF-KLKHSRPYLLSMANKGPNSNSSQFFITTAA-APHCN 132

  Fly   121 GNHCVIGEVVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAER 185
            |.|.|.||||:|..|:..:::..|||..:|...:.|::                           
 Worm   133 GKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISN--------------------------- 170

  Fly   186 LKNGRIAADEDIDDTDGMTAEEMQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPV 250
                                                     .|:|             |.|..|:
 Worm   171 -----------------------------------------CGEL-------------VKKKKPL 181

  Fly   251 TTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIHVDF 315
            .||::|                                       ||..:..|            
 Worm   182 KTDEEL---------------------------------------AAALEEKN------------ 195

  Fly   316 SQSVSKVTWRGKGRGIEGDYRKLDFNNLRDDKDHRKPNNGRSRTEDHKERNRTEDFRNRMSSAER 380
                                     ||.||::..:.|.:...|.:|:::       ::.|.:.:|
 Worm   196 -------------------------NNARDNEIPKCPKSWLYRDDDNEK-------KHEMRNDKR 228

  Fly   381 RKAREQRHQEQSERDVRKNLQRRTRSKEKDEKSVYRSKKSQNESVR-ENSNRERNRNEKRSSRSR 444
            |:.|.:|.:.            |:..|.:|.|...|...|:::..| ||....|.|...|..|.|
 Worm   229 REYRSRRSRS------------RSHEKNRDYKKENRGDSSRSQPRRDENGITVRGRGGVRFRRER 281

  Fly   445 DATHRRYSRS 454
            .||...:.|:
 Worm   282 SATPEHWRRN 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 57/177 (32%)
RRM_PPIL4 237..319 CDD:409681 9/81 (11%)
PRK12678 344..>510 CDD:237171 27/112 (24%)
U2AF_lg 467..>572 CDD:273727
cyn-9NP_497745.1 cyclophilin 6..172 CDD:469651 57/236 (24%)
Blue background indicates that the domain is not in the aligned region.

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