DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and cyn-10

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001021890.1 Gene:cyn-10 / 174132 WormBaseID:WBGene00000886 Length:161 Species:Caenorhabditis elegans


Alignment Length:165 Identity:62/165 - (37%)
Similarity:96/165 - (58%) Gaps:8/165 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFIAQTGDPSGAGDGGSS 65
            |||.:.||.||:.::|::.:.|.||.|||.||...|||..:||...:.|:.|||||:.:|.||.|
 Worm     1 MSVTLHTTSGDIKIELYVDDAPKACENFLALCASDYYNGCIFHRNIKDFMVQTGDPTHSGKGGES 65

  Fly    66 IWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLDGNHCVIGEVV 130
            |||   ||    ||.||:..:.|.|.|.:|:.:.|.:...||||:|..:. ..||..:.:.|:|:
 Worm    66 IWG---GP----FEDEFVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQ-AHLDMKYTLFGKVI 122

  Fly   131 EGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLEDP 165
            :|.:.|.::....||:.:||....:|.:..:..:|
 Worm   123 DGFDTLEEIETIKVDNKYRPLVQQKIQNVTIHANP 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 59/162 (36%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
cyn-10NP_001021890.1 Cyclophilin_PPIL3_like 1..153 CDD:238909 61/159 (38%)
Blue background indicates that the domain is not in the aligned region.

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