DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and LOC1279422

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_319139.3 Gene:LOC1279422 / 1279422 VectorBaseID:AGAMI1_009248 Length:161 Species:Anopheles gambiae


Alignment Length:166 Identity:69/166 - (41%)
Similarity:97/166 - (58%) Gaps:9/166 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFIAQTGDPSGAGDGGSS 65
            |||.:.|.:||:.::||..:.|..|.|||.||...|||.||||...:|||.|||||:|.|.||.|
Mosquito     1 MSVTLHTDVGDIKIELFCDDCPKTCENFLALCASDYYNGNLFHRNIKGFIVQTGDPTGTGKGGQS 65

  Fly    66 IWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTSLDGNHCVIGEVV 130
            ||       ||.||.||...:.|:..||:|:.::|.|..|||||.|.... |:||..:.:.|:|:
Mosquito    66 IW-------KRKFEDEFKENLKHNERGMVSMANSGPNTNGSQFFFTYAAQ-TALDLKYTLFGQVI 122

  Fly   131 EGHEVLRKLNDAIVD-DSFRPYQDIRITHTVVLEDP 165
            :|.|.|.:|....|: .::||..:.:|....:..:|
Mosquito   123 DGFEALDELEKLTVNPKTYRPVVEKKINSVTIHANP 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 66/163 (40%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
LOC1279422XP_319139.3 None
Blue background indicates that the domain is not in the aligned region.

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