DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and ninaA

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_319131.5 Gene:ninaA / 1279414 VectorBaseID:AGAMI1_012925 Length:253 Species:Anopheles gambiae


Alignment Length:172 Identity:56/172 - (32%)
Similarity:87/172 - (50%) Gaps:25/172 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVVIE-TTMGDLTVDLFISERPIACLNFLKLCRLKY----YNFNLFHTVQQGFIAQTGD-PSGA 59
            |.|.|: ..:|.:|:.:|..|.|....||.:||....    |..:.||.|.|.|:.|.|| .||.
Mosquito    34 MDVSIDGEKIGRITIGMFGEEAPKTVANFRQLCTKDVDGFSYKGSRFHRVIQKFMIQGGDVVSGD 98

  Fly    60 GDGGSSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTS--LDGN 122
            |.|..|::|       ::|:.|.| ||||:.:|.:::.:.|.|..|.||::|   .|.:  |||.
Mosquito    99 GHGAISMYG-------KYFDDENL-KINHTCSGFIAMANRGPNTNGCQFYIT---TLPAPWLDGK 152

  Fly   123 HCVIGEVVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLED 164
            |.:.|:|::|..|:.|:.....|....|.:      .|::||
Mosquito   153 HTIFGKVLDGQAVVHKVEQVRTDTDDYPVK------PVIIED 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 54/169 (32%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
ninaAXP_319131.5 None
Blue background indicates that the domain is not in the aligned region.

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