DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and LOC1271778

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_310632.6 Gene:LOC1271778 / 1271778 VectorBaseID:AGAMI1_007047 Length:227 Species:Anopheles gambiae


Alignment Length:155 Identity:52/155 - (33%)
Similarity:82/155 - (52%) Gaps:16/155 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MGDLTVDLFISERPIACLNFLKLCRLKY---YNFNLFHTVQQGFIAQTGD-PSGAGDGGSSIWGV 69
            :|.:.::|.....|....||..||..:.   |..::||.|...|:.|.|| .:..|.||.||:| 
Mosquito    80 LGRIVIELRPDVVPKTSENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFQNHNGTGGKSIYG- 143

  Fly    70 VEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTS-LDGNHCVIGEVVEGH 133
                 .:|.:..|:  :.|:..|:||:.:||.|..|||||:|..:  || |:..|.|.|.||||.
Mosquito   144 -----NKFEDENFI--LKHTGPGILSMANAGPNTNGSQFFITTVK--TSWLNDRHVVFGSVVEGM 199

  Fly   134 EVLRKLNDAIVDDSFRPYQDIRITH 158
            :|:||: ::....|.:|.:.|.:.:
Mosquito   200 DVVRKI-ESFGSHSGKPSKQITVAN 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 52/155 (34%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
LOC1271778XP_310632.6 None
Blue background indicates that the domain is not in the aligned region.

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