DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5808 and LOC1270014

DIOPT Version :10

Sequence 1:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_308669.2 Gene:LOC1270014 / 1270014 VectorBaseID:AGAMI1_001469 Length:202 Species:Anopheles gambiae


Alignment Length:165 Identity:61/165 - (36%)
Similarity:89/165 - (53%) Gaps:18/165 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GDLTVDLFISERPIACLNFLKLC----RLKYYNFNLFHTVQQGFIAQTGD-PSGAGDGGSSIWGV 69
            |.:.:.||....|....||.:|.    :.:.|..:.||.|.:.|:.|.|| ..|.|.||.||:| 
Mosquito    39 GRIVIGLFGGTVPKTARNFKELAEKTTKGEGYKGSKFHRVIRDFMIQGGDFTKGDGTGGRSIYG- 102

  Fly    70 VEGPQKRFFEAEFLPKINHSSAGMLSLVSAGKNLVGSQFFLTLGENLTS-LDGNHCVIGEVVEGH 133
                 :||.:..|  |:.|..||.||:.:|||:..|||||:|:.:  || |||.|.|.|:|:||.
Mosquito   103 -----ERFADENF--KLKHYGAGWLSMANAGKDTNGSQFFITVKQ--TSWLDGRHVVFGKVLEGM 158

  Fly   134 EVLRKLNDAIVDDSFRPYQDIRI--THTVVLEDPF 166
            .|:||:.....|...||..|:.|  :.::.:.:||
Mosquito   159 NVVRKIESTATDGRDRPTNDVEIADSGSLPVSEPF 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 61/165 (37%)
RRM_PPIL4 237..319 CDD:409681
PRK12678 344..>510 CDD:237171
U2AF_lg 467..>572 CDD:273727
LOC1270014XP_308669.2 cyclophilin 25..185 CDD:469651 59/155 (38%)
Blue background indicates that the domain is not in the aligned region.

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