DRSC/TRiP Functional Genomics Resources

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Protein Alignment lili and lmbr1

DIOPT Version :9

Sequence 1:NP_651290.1 Gene:lili / 42956 FlyBaseID:FBgn0027539 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001011160.1 Gene:lmbr1 / 496578 XenbaseID:XB-GENE-981846 Length:485 Species:Xenopus tropicalis


Alignment Length:509 Identity:216/509 - (42%)
Similarity:308/509 - (60%) Gaps:58/509 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EEEEVTDLKLQLFHNTVREHIIFLLLIILLYSSSYVVVSRFRRRDRDDLYSNDEDEVLVYRISFW 69
            ||:||| ::.|.|::.|||.||..||..:||..||.::.|::|:..:    .::::..|.|:|.:
 Frog     2 EEDEVT-IREQNFYSQVRECIICFLLFAILYIVSYFIIKRYKRKGDE----QEDEDATVNRVSLF 61

  Fly    70 LCTFTLAVAEGAAMLLPVSIASNEVLLLYPNSYYVKWLNSSLIQGLWNHVFLFSNLSLFIFLPFV 134
            ||||||||:.||.:|||.||.|||:||.:|.|||::|||.|||.||||.|.|||||.||:.:||.
 Frog    62 LCTFTLAVSGGAVLLLPFSIISNEILLCFPKSYYIQWLNGSLIHGLWNLVSLFSNLCLFVLMPFA 126

  Fly   135 YLFSESTGFVGNKKGILPRVYETFTVFMLMAIIVLVLTAVLSAVF-----GIEKLQFFWFLNLGS 194
            :.|.||.||.|.||||..|:.||..:.:|:|:::..:..|.||:.     .:|.|...|     .
 Frog   127 FFFLESEGFAGLKKGIKARILETIIMLILLALLIFGIVWVASALIDNSSASMESLYDLW-----D 186

  Fly   195 VHLPFLYSCVSFLGVMLMLICTPYGFVRLFGVVNQVLVRPMLLRDVNEEFSAFYMEEASVKRKLA 259
            .:||:||||:|.:|.:|:|:|||.|..|:|.|:.|:||:|.:|.|::|:.....::|.:::||| 
 Frog   187 CYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDIDEQMYIISLQEEALQRKL- 250

  Fly   260 HIELHNVSIADAANGGRLGNRIGLGRGRTFYPQPLLQHSQAHLYQRKAMASDVDELNDRLRELDS 324
                         |||.             |...         |.||.:..|:  ||.|     |
 Frog   251 -------------NGGN-------------YTAD---------YSRKKIEHDL--LNAR-----S 273

  Fly   325 ERKELDKLRTSSTFQRTFVYPLAMLLLLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGISS 389
            .:.:|::.:.:|.:||..|||..|:|||..|..:::||..|.|.||:...|:|..::....|.:|
 Frog   274 MKSKLERRKNASAWQRNLVYPAVMILLLIATFSSVILVSLNILRLLVDETAMPKGSKGSGFGDAS 338

  Fly   390 LSKLGPFGAGLEVCLIFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSALPLL 454
            |...|..||.||:.|||||..:|||||||:.|.....|::..|::.:::.||..:||||||||::
 Frog   339 LFTFGFAGATLEIILIFYLMVSSVVGFYSLRFFSSFTPRKDDTTMTKVIGNCLSILVLSSALPVM 403

  Fly   455 SRIIGITNFDLLGDFGAIEWLGNFQIVLLYNLVFGTTTALCLANKFTATVRREL 508
            ||.:|||.||||||||...|||||.||:.|||:|...|.|||..|||:.||.||
 Frog   404 SRTLGITRFDLLGDFGRFNWLGNFYIVVAYNLMFAVMTTLCLVRKFTSAVREEL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
liliNP_651290.1 LMBR1 63..495 CDD:282625 186/436 (43%)
lmbr1NP_001011160.1 LMBR1 18..449 CDD:368121 201/482 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 401 1.000 Inparanoid score I1877
OMA 1 1.010 - - QHG48055
OrthoDB 1 1.010 - - D334825at33208
OrthoFinder 1 1.000 - - FOG0003610
OrthoInspector 1 1.000 - - otm49025
Panther 1 1.100 - - O PTHR12625
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2924
SonicParanoid 1 1.000 - - X2485
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.110

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