DRSC/TRiP Functional Genomics Resources

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Protein Alignment lili and Lmbr1l

DIOPT Version :10

Sequence 1:NP_651290.1 Gene:lili / 42956 FlyBaseID:FBgn0027539 Length:527 Species:Drosophila melanogaster
Sequence 2:XP_038934850.1 Gene:Lmbr1l / 300215 RGDID:1309631 Length:515 Species:Rattus norvegicus


Alignment Length:515 Identity:227/515 - (44%)
Similarity:309/515 - (60%) Gaps:58/515 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EEEEEEVTDLKLQLFHNTVREHIIFLLLIILLYSSSYVVVSRFRRRDRDDLYSNDEDEVLVYRIS 67
            |..:.||..::.||||:.|||.||.:||...||...::.::||::  ..:..:.|:::..|.:|:
  Rat     2 EAADYEVLSVREQLFHDRVRECIISILLFATLYILCHIFLTRFKK--PAEFTTVDDEDATVNKIA 64

  Fly    68 FWLCTFTLAVAEGAAMLLPVSIASNEVLLLYPNSYYVKWLNSSLIQGLWNHVFLFSNLSLFIFLP 132
            ..|||||||||.||.:|||.||.||||||..|.:||::|||.|||.||||.|||||||||...:|
  Rat    65 LELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLVFLMP 129

  Fly   133 FVYLFSESTGFVGNKKGILPRVYETFTVFMLMAIIVLVLTAVLSAVFGIEK-----LQFFWFLNL 192
            |.|.|:||.||.|::||:|.|||||..:.:|:.::||.:..|.||:...:|     |..||    
  Rat   130 FAYFFTESEGFAGSRKGVLGRVYETVVMLILLTLLVLGMVWVASAIVDNDKASRESLYDFW---- 190

  Fly   193 GSVHLPFLYSCVSFLGVMLMLICTPYGFVRLFGVVNQVLVRPMLLRDVNEEFSAFYMEEASVKRK 257
             ..:||:||||:|||||:|:|:|||.|..|:|.|..::||:|.||.|:.|:.:....|||::.|:
  Rat   191 -EYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQLNCSAFEEAALTRR 254

  Fly   258 LAHIELHNVSIADAANGGRLGNRIGLGRGRTFYPQPLLQHSQAHLYQRKAMASDVDELNDRLREL 322
            :.:                          .|....||                |::.|:.::..|
  Rat   255 ICN--------------------------PTSCWLPL----------------DMELLHRQVLAL 277

  Fly   323 DSERKELDKLRTSSTFQRTFVYPLAMLLLLFCTAVTILLVVQNTLELLIGIKALPLSTRQFALGI 387
            .::|..|:|.|.:|.:||...||||||.||..|.:::|:|..:.|||||...|:|...:..|||.
  Rat   278 QAQRVLLEKRRKASAWQRNLGYPLAMLCLLVLTGLSVLIVAVHILELLIDEAAMPRGMQDAALGQ 342

  Fly   388 SSLSKLGPFGAGLEVCLIFYLGATSVVGFYSMPFMRKVCPKRRQTSLPQLMLNCGFMLVLSSALP 452
            .|.||||.|||.::|.|||||..:|||||||.|....:.|:...||:.|::.||..:||||||||
  Rat   343 VSFSKLGSFGAIIQVVLIFYLMVSSVVGFYSSPLFGSLRPRWHDTSMTQIIGNCVCLLVLSSALP 407

  Fly   453 LLSRII----GITNFDLLGDFGAIEWLGNFQIVLLYNLVFGTTTALCLANKFTATVRREL 508
            :.||.:    |:|.||||||||...|||||.||.|||..|...|.|||...|||.||.||
  Rat   408 VFSRTLDSASGLTRFDLLGDFGRFNWLGNFYIVFLYNAAFAGLTTLCLVKTFTAAVRAEL 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
liliNP_651290.1 LMBR1 65..500 CDD:461429 200/443 (45%)
Lmbr1lXP_038934850.1 LMBR1 24..456 CDD:461429 209/480 (44%)

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