DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6980 and stip1

DIOPT Version :9

Sequence 1:NP_651289.1 Gene:CG6980 / 42955 FlyBaseID:FBgn0039228 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001007767.1 Gene:stip1 / 493606 ZFINID:ZDB-GENE-041121-17 Length:542 Species:Danio rerio


Alignment Length:214 Identity:54/214 - (25%)
Similarity:87/214 - (40%) Gaps:46/214 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 INFDNLDVDKVR------LKV-KENR----------TVINRKSLEEDNEKQVKDMNQKSFMEQVE 111
            :.|:..|.||.|      :.| :|||          ..|.....:::..|:......||..|...
Zfish   267 VYFEKGDFDKCRELCEKAIDVGRENREDYRQIAKAYARIGNSYFKQEKYKEAVQFFNKSLTEHRT 331

  Fly   112 KDANDRAEARAKAEYEAEL-----------QRSQGNEAFRSQKYEKAILHYDKAIIKVKDSAITY 165
            .|...:.:...|...|.|.           ::::||:||:...|..|:.||.:||.:....|..:
Zfish   332 PDVLKKCQEAEKILKEQEKVAYINPDLALEEKNKGNDAFQKGDYPLAMKHYSEAIKRNPYDAKLF 396

  Fly   166 CNRALCYIKLQNYKRALKDCQYVLEKLQESNLRAWLYQAHAYKGLKQDDKFEESVVKAREHNPKQ 230
            .|||.||.||..::.|||||:..:      ||.:...:.:..||         :.::|.:...|.
Zfish   397 SNRAACYTKLLEFQLALKDCEECI------NLDSTFIKGYTRKG---------AALEAMKDFSKA 446

  Fly   231 LAYIDKYIKQLEADLKALE 249
            :   |.|.|.||.|..:.|
Zfish   447 M---DVYQKALELDSNSKE 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6980NP_651289.1 TPR_11 127..190 CDD:290150 25/73 (34%)
TPR repeat 128..156 CDD:276809 10/38 (26%)
TPR repeat 161..192 CDD:276809 13/30 (43%)
TPR_1 162..190 CDD:278916 13/27 (48%)
TPR repeat 197..225 CDD:276809 4/27 (15%)
stip1NP_001007767.1 TPR_11 7..69 CDD:290150
TPR 7..37 CDD:197478
TPR repeat 7..32 CDD:276809
TPR repeat 37..67 CDD:276809
TPR_11 40..103 CDD:290150
TPR repeat 72..100 CDD:276809
TPR_11 224..285 CDD:290150 5/17 (29%)
TPR repeat 228..252 CDD:276809
TPR_1 230..257 CDD:278916
TPR_12 254..327 CDD:290160 13/59 (22%)
TPR repeat 257..287 CDD:276809 5/19 (26%)
TPR 299..327 CDD:197478 4/27 (15%)
TPR repeat 299..326 CDD:276809 3/26 (12%)
TPR_11 359..423 CDD:290150 24/69 (35%)
TPR repeat 363..387 CDD:276809 9/23 (39%)
TPR repeat 392..422 CDD:276809 13/35 (37%)
TPR_1 427..459 CDD:278916 10/43 (23%)
TPR repeat 427..455 CDD:276809 7/39 (18%)
STI1 491..530 CDD:128966
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0548
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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