DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and Baz1b

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_001178845.1 Gene:Baz1b / 368002 RGDID:1597089 Length:1476 Species:Rattus norvegicus


Alignment Length:1708 Identity:326/1708 - (19%)
Similarity:552/1708 - (32%) Gaps:612/1708 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 LIGNAKAFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEE-EPRARRMSRQVRRMTSSTEPGG 184
            |.|....|.||               |:|     ||....|| |.|..|.|.::....|:   |.
  Rat    16 LPGEEPLFTIP---------------HTQ-----EAFRTREEYEARLERYSERIWTCKST---GS 57

  Fly   185 DGATDDEYNQYEELFASVMTATDPVGDRLMHRMFQLLPSKKIYPDYYDVIEHPIDLRLIATKIQM 249
            ...|..|..:.|:..|.::                    |:.:|::|:        :|:...:..
  Rat    58 SQLTHKEAWEEEQEVAELL--------------------KEEFPNWYE--------KLVLEMVHH 94

  Fly   250 NAYSSLAEMERDLLQ-MTKNACLFNEPGSQIYKDAKSLKRIFTQRRIELEMGKGKLAKRVKSLSS 313
            |..|....::...|: |||.|                     .....:.|:||.|:.| ||.:..
  Rat    95 NTASLEKLVDSAWLEIMTKYA---------------------VGEECDFEVGKEKMLK-VKIVKI 137

  Fly   314 AAIAALKEEV-----------DSSDDEETS----------------------------------- 332
            ..:..:.||.           .|||.|.:|                                   
  Rat   138 HPLEKVDEEAAEKKSDGTCDSPSSDKENSSQMAQDHQKETVVKEDGGRRESINDRARRSPRKLPT 202

  Fly   333 --KKGEGPMWA---LFDHLYNAPGTSEHPGVTGPPLGNSLWKLPVRRFHPEYFELIKRPISMSQI 392
              |||| ..||   ...|.|:....||...::..| .:||    :|...|...|:::..|.    
  Rat   203 SLKKGE-RKWAPPKFLPHKYDVKLQSEDKIISNVP-ADSL----IRTERPPNKEILRYFIR---- 257

  Fly   393 HTKLKKGDYAN------------------ISDLTAD--LYLMLDNAKKAFPT-------SHRTHK 430
            |..|:.|...|                  .||...|  .|:.|:.:.|...|       |.:..:
  Rat   258 HNALRAGTGENAPWVVEDELVKKYSLPSKFSDFLLDPYKYMTLNPSTKRKNTGSPDRKPSKKPKR 322

  Fly   431 DALKMLKLMNAKL-----VEESLEEGSDL------DDEDAEEMDTEVFTVSTQ------------ 472
            |...:...:|.||     :|:|| .|..|      :.:..||...||..:.:.            
  Rat   323 DNSSLSSPLNPKLWCHVHLEKSL-NGPPLKVKNSKNSKSPEEHLEEVMKIMSPNKLHSFHIPKKG 386

  Fly   473 PEKRKPG-------RPRINSNSNSNASHTPNNSNSPKSNRIAINAAIKKKILSIQKYLVDYSLGN 530
            |..:|||       :.:.......|...:..||.||  ::.......|.|    |..|:|.:.|.
  Rat   387 PSTKKPGKHSDKPLKAKGRGKGILNGQKSTGNSKSP--SKCVKTPKTKMK----QMTLLDMAKGT 445

  Fly   531 RRPIEMFMEKPPR-------------KIYPDYYDIIQNPIDMNTI----EHNIRTDRYAAVEDVV 578
            ::     |.:.||             |..|        |..::.|    |:..:.|:.:|:..|:
  Rat   446 QK-----MTRTPRSSGGVPRSSGKPHKHLP--------PAALHLIAYYKENKDKEDKKSALSCVI 497

  Fly   579 SDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGR----KLKTA 639
            |....:.|     :|:.:.:.|:.    |||.:|..|   |.|.||.....|:..|    |.|..
  Rat   498 SKTARLLS-----SEDRARLPEEL----RALVQKRYE---LLEHKKRWASMSEEQRKEYLKKKRQ 550

  Fly   640 VITERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDY---------YDIIREPIDMDRIAQ 695
            .:.|||   .|..||.:|.:       :..:|..:..|.|.         :.::..|        
  Rat   551 ELKERL---REKAKERREKE-------MLERLEKQKRYEDQELGGRNLPTFRLVDTP-------- 597

  Fly   696 KLKQGAYDTLDDLAADFLLMLENACKYNE---PDSQIYKDALVLQQLTLQLKQQLRTERDSLPDV 757
               :|..:|   |..|..|::|....|:.   ||:|....|       :.|.:.|..::...   
  Rat   598 ---EGLPNT---LFGDVALVVEFLSCYSGLLLPDAQYPITA-------VSLMEALSADKGGF--- 646

  Fly   758 PLAVQELFLTLFTTIYNHQDEEGRCYSDSLAELPEYDEIGEGPKVRGISLDLVK-RRLDKGAYKR 821
             |.:..:.:.|..|:.  |||        :||  :|.|:  |.|:..|.|.|.. ..|.:...:|
  Rat   647 -LYLNRVLVILLQTLL--QDE--------IAE--DYGEL--GMKLSEIPLTLHSVSELVRLCLRR 696

  Fly   822 LDVYQEDIFACLERARKLSRTDSDIFQDSIELQTYFIRKRD-----------------ELCKDTL 869
            .|| |||    .|.:......||..|:|: |:|..|:.|.:                 .||...|
  Rat   697 CDV-QED----SEGSDTDDNKDSTPFEDN-EVQDEFLEKLETSEFFELTSEEKLRILTALCHRIL 755

  Fly   870 SSSALNFSLE-RLMADVELC-----------------RQQKMQQEEQDQEQDKEKDEFNAA--KG 914
            .:.::...:| |.....||.                 :|::.:.|.:::|..||::.....  |.
  Rat   756 MTYSVQDHMETRQQMSAELWKERLAVLKEENDKKRAEKQKRKEMEARNKENGKEENVLGKVDRKK 820

  Fly   915 ESMTINQQVFSPGDYVY------------------VQMPENKIPSICCIERLWTSPTNEKLMQAS 961
            |.:.|..||....|.:.                  :|..|.|:       ||......|:     
  Rat   821 EIVKIENQVEVEADDMISAVKSRRLLSMQAKRKREIQERETKV-------RLEREAEEER----- 873

  Fly   962 IFVRPHETYHVTTRKFLEKEVFKSSL---SQTISMDK-----------VQGMC----YVMNIKDY 1008
              ||.|:   ....|..::.:.|:.|   ...|..|:           |.|:.    :|.|..||
  Rat   874 --VRKHK---AAAEKAFQEGIAKAKLVLRRTPIGTDRNHNRYWLFSNEVPGLFIEKGWVHNSIDY 933

  Fly  1009 ----IKMRPENLPEKDVYVCESRYNI---------QGRWFKKLKSWPPVREGSSVKFVPREQPLE 1060
                .:....|||:.|......:.|:         .|...:.:::..| ::|.::.|:...|. |
  Rat   934 RFKHHRKDHNNLPDDDYCPRSKKANLGKNASVNAHLGSALEAVETTVP-KQGQNLWFLCDSQK-E 996

  Fly  1061 LKRVM----------SVFKERLEKHKGELEELKLQETLVEKEKPNV---SCDPPPNAEVGSTYYQ 1112
            |..::          |..||||||...|     :..::....|||:   |||  .|.|:      
  Rat   997 LDELLNCLHPQGIRESQLKERLEKRYQE-----ITHSIHLARKPNLGLKSCD--GNQEL------ 1048

  Fly  1113 QYNTICSGAIKTGDFVYVATQTGKQSVAQVQQIWEQNGKSYFKGPWLLPPSETTPGLGKQFYRQE 1177
             .|.:.|      |.:.|||:.            ::.|..|.:|.             .:|..:.
  Rat  1049 -LNFLRS------DLIEVATRL------------QKGGLGYMEGT-------------SEFEARV 1081

  Fly  1178 LLLSTVEEVSPVVGIVGRCAVLEYSEFI----------SSRPTEISESDVYICESVYDELKKALR 1232
            :.|..:::       .|.|.:...:..|          ..:..::...|....|.|.:|.|....
  Rat  1082 ISLEKLKD-------FGECVIALQASVIKKFLQGFMAPKQKKRKLQSEDSTKSEEVDEEKKMVEE 1139

  Fly  1233 KLVTGNMRKFQHSPSVTEDEIFYFKTPIKPSKDFKNELNELGMLEDSMDGDTPSLSSDIAAMSSP 1297
            ..|...:.|              :||.|:.::.|......||||:       ..:..|::|.::.
  Rat  1140 AKVASALEK--------------WKTAIREAQTFSRMHVLLGMLD-------ACIKWDMSAENAR 1183

  Fly  1298 APSVNSTPLTSKVKAAKSAKK-----CLTG--YILYSSEVRKSICQ----------------SNP 1339
            ...........|:.......|     ||..  |.:...|.:...||                |..
  Rat  1184 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPPTARRNSRGRNYTEESTS 1248

  Fly  1340 DATFGDIS---------------------------RMVGTEWKNLPSS------VKQSWEDRASR 1371
            :.:.||.|                           :.:..:...:|::      .|:|...|.||
  Rat  1249 EDSEGDESGDEEEEEEEEEEEEEDYEVAGLRLRPRKTIRGKQSVIPAARPGRPPGKKSHAARRSR 1313

  Fly  1372 QNEETAALRRELDDVQNSASPSS-------QVSQDVFGQVLTFECQW--------DKCDFQFEEL 1421
            ..::|     |:|::......||       |..:::..:::.:...|        |:.    |:.
  Rat  1314 PKDDT-----EVDELVLQTKRSSRRQSLELQKCEEILHKLVKYRFSWPFREPVTRDEA----EDY 1369

  Fly  1422 SDCTEHCMSDSTGHIQRHPQAGVETEYVCLWRNCPRVKKSVQAFPNVLRLIKHVREVHLSKCGKT 1486
            .|..:|.|...|  :|.....|   .|           :|||.|...::.:....|::..:....
  Rat  1370 YDVIDHPMDFQT--MQNKCSCG---NY-----------RSVQEFLTDVKQVFANAELYNCRGSHV 1418

  Fly  1487 ISAADRSKN-FVPRRQKH 1503
            :|..::::. .:...|||
  Rat  1419 LSCMEKTEQCLLALLQKH 1436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 9/36 (25%)
Bromo_polybromo_II 191..294 CDD:99948 14/103 (14%)
Bromo_polybromo_III 335..443 CDD:99951 29/137 (21%)
Bromo_polybromo_IV 512..613 CDD:99949 24/117 (21%)
Bromo_polybromo_V 641..733 CDD:99946 21/103 (20%)
Bromo_polybromo_VI 758..867 CDD:99956 33/126 (26%)
BAH_polybromo 921..1040 CDD:240068 29/167 (17%)
BAH_polybromo 1120..1234 CDD:240068 17/123 (14%)
HMG-box 1320..1375 CDD:238037 15/105 (14%)
Baz1bNP_001178845.1 WAC_Acf1_DNA_bd 21..120 CDD:287503 30/170 (18%)
DDT 602..666 CDD:214726 18/87 (21%)
WHIM1 722..771 CDD:292246 8/48 (17%)
WHIM2 897..925 CDD:292247 4/27 (15%)
WHIM3 988..1026 CDD:292248 12/43 (28%)
PHD_BAZ1B 1183..1228 CDD:277098 6/44 (14%)
Bromo_WSTF_like 1337..1433 CDD:99937 17/115 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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