DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and brd8b

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:XP_017214481.1 Gene:brd8b / 337414 ZFINID:ZDB-GENE-030722-10 Length:864 Species:Danio rerio


Alignment Length:790 Identity:156/790 - (19%)
Similarity:273/790 - (34%) Gaps:233/790 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TTTQSARKKRRLDPTE-------LC---------QQLYDSI-RNIK--KEDG------------- 67
            :|.....|...|.|||       ||         .|.:.|: |.||  .|.|             
Zfish     2 STGMGKHKMLSLGPTEPWSIREKLCLASSVMRSGDQNWVSVSRAIKPFSESGRPPDWFSQKHCAS 66

  Fly    68 --SMLCDTFIRVPKRRQ------EPSYYDVVVNPIDLLKVQQ--KLKTDSYDDLDDLMADLELLI 122
              |.|.:| ...|||::      ..:..||:|..:...::::  :|..|:.:....|..:::|: 
Zfish    67 QYSQLLET-TEAPKRKRGEKGEVVETIEDVIVRRLTAERIEELKRLIKDTQEKYRKLKKEVDLI- 129

  Fly   123 GNAKAFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRARRMSRQVRRMTSST------- 180
               :|.::....|     .||..|..::::..|.   ||::.||...:.|:|:...:|       
Zfish   130 ---QAGHVDPKLE-----ELWAEIELKKKQEEEE---AEQKKRATEAAYQIRQAAKNTPKRVPSV 183

  Fly   181 ----EPGGDGAT------DDEYNQYEELFASVM----TATDPVGDRL--------MHRMFQLLPS 223
                .||....:      |......:|..||.|    |...||.|.:        :..:....|.
Zfish   184 TVRSPPGASSPSMDILQPDASQPMTDESCASPMAQGVTVFMPVSDVMGPGPKESGLSSLVDDSPQ 248

  Fly   224 KKIYPDYYDVIEHPIDLRLIATKIQMNAYSSLAEMERDLLQMTKNACLFNE--------PGSQ-I 279
            ||...........|: |..:..|..:.|.||...:|.::.....|.....|        |.:| |
Zfish   249 KKHLAPKATPPPSPL-LSELLKKGSLIAASSRLVVEGEVATGLSNGSHAVELHTSATVLPATQDI 312

  Fly   280 YKDAKSLKRIF-----TQRRIE--------------------------LEMGKGKLAKRVKSLSS 313
            ..||.:|.|:.     .|:.:.                          :..|.|..|....|.:.
Zfish   313 TADAPTLSRLLESVTPAQQPVSADPPKPPTVVPPAPDHLSVPKSGDAAIAEGSGAEAVMAGSSTP 377

  Fly   314 AAIAALKEEVDSSD------------DEET--------SKKGEGPMWALFDHLYNAP-GTSEHPG 357
            |.:...:.|:...|            |.||        .:|.:.|:.||......|. ...|.|.
Zfish   378 AEVEGKETELVEEDTVVSVSYMGHELDLETVGDIIAIIEEKVDDPVEALDAAAVEAALSLCEDPA 442

  Fly   358 VTGPPLGNSLWKLPV-RRFHPEYFELIKRPISMSQIHTKLKKGDYANISDLTADLYLMLDNAKKA 421
            |.|.|| .|.|:... :...||..      |..|.|....:..  .|.:.:..::.::::.|.:.
Zfish   443 VGGHPL-TSPWESQTFKAAEPEPM------IQQSAIPAGAESA--PNSAIVQGEMEVLVEEATET 498

  Fly   422 -----------FPTSHRTHKDALKMLKLMNAK------LVEESLE------------EGSD---- 453
                       .|::..|.:.....:|....:      .|||:.:            ||.|    
Zfish   499 EAVEGVTEEPEVPSAPETEQSQDSEVKTEVERGGEGEGGVEETAQPENRTPSPAVKCEGEDWVQP 563

  Fly   454 ------LDDEDA------------EEMDTEVFTVSTQPEKRKPG------------RPRINSNSN 488
                  ||.||:            |:..:|| .|....|.::.|            .|..:.:.:
Zfish   564 ETVTPCLDSEDSSASAKDAKEVKEEDGGSEV-DVDEGMEMKECGDGDGEGPYLSEVDPPASESED 627

  Fly   489 SNASHT------PNNSNSPKSNRIAINAAIKKKILSIQK------YLVDYSLGNRRPIEMFMEKP 541
            ...||:      .:.::||.|::.:: .:..::.|..||      .||..:..|.|...:|::..
Zfish   628 GYGSHSQRYTTADSTASSPASSQFSM-CSEDQEALQAQKIWKKAIMLVWRAAANHRYASVFLQPV 691

  Fly   542 PRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYEDANILE 606
            ...|.|.|:.|:..|:|::.|:.||.:.:.....:...|..|||.|...||....::|..|..::
Zfish   692 SDDIAPGYHSIVHRPMDLSAIKKNIESGQIRTTAEFQRDIMLMFQNAVMYNSSDHDVYHMALEMQ 756

  Fly   607 RALNEKLKEF 616
            |.:.|::::|
Zfish   757 RDVLEQIQQF 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 32/153 (21%)
Bromo_polybromo_II 191..294 CDD:99948 28/128 (22%)
Bromo_polybromo_III 335..443 CDD:99951 22/126 (17%)
Bromo_polybromo_IV 512..613 CDD:99949 28/106 (26%)
Bromo_polybromo_V 641..733 CDD:99946
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
brd8bXP_017214481.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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