DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and baz1a

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_001352072.1 Gene:baz1a / 334173 ZFINID:ZDB-GENE-030131-6105 Length:1470 Species:Danio rerio


Alignment Length:855 Identity:158/855 - (18%)
Similarity:261/855 - (30%) Gaps:307/855 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRKRRASSISSRQDEDPLQLDDSTPEQSPVQQTTTQSARKKRRLDPTELCQQLYDSIRNIKKEDG 67
            |::..|...:..::|.|.:...........::..:.....|..|.|.||..|.......:::...
Zfish   690 SQEGHAEQHTEDEEEQPAKSKKVKKTNGTTKEKPSGEVEMKDNLSPEELQLQQLKERELLERIQQ 754

  Fly    68 SMLC---------------------------DTFIRV------PKRRQEPSYYDVVVNPIDLLKV 99
            :|.|                           |.|..:      |:...||...:|       |..
Zfish   755 AMACTYILPLGRDRLYRRYWIFPSAGALFVEDDFFGLTEDMLEPRPTPEPKIEEV-------LSA 812

  Fly   100 QQKLKTDSYDDLDDLMADLELLIGNAKAFYIPGSSEHQDAV------------SLWQHIHSQRQR 152
            :..:|||...:...|:.:....:.....:|...::|..:.:            ||.:.:..:|.|
Zfish   813 ESPVKTDGATEELVLVQNTSPPVNRPNQWYFYSTTEEVEQLIEALNPRGLRESSLKETLTLERGR 877

  Fly   153 I---MEANGL------AEEEPRARRMSRQVRRMTSSTEPG--------GDGATDDEYNQYEELFA 200
            |   ||:|..      .|..|..:..|.:.:....||.|.        .|...|.|...|:....
Zfish   878 IFQLMESNAAQRYHHSGESLPETKGSSGKAKVGPQSTVPAECFMENRLRDLLLDIEDRIYQGTLG 942

  Fly   201 SVMTATDPVGDRLMHR----------MFQLL-PSKKIYPDYYDVIEHPIDL--------RLIATK 246
            |:         ::|.|          .::|| |..|.| ...|..|.|:::        ||...|
Zfish   943 SI---------KVMERNSWRAALENGNYELLDPDFKEY-GLTDREEEPMEIEENHRVKDRLQELK 997

  Fly   247 IQMNAYSSLAEMERDLLQMTKNA--CLFNEPGSQIYKDAKSLKRIFTQRRIELEMGKGKLAKRVK 309
            ::.::.:|.:.   ...|...|.  ||           |.:|.::  ::.||.:..|..|.....
Zfish   998 VEGHSATSTSV---STPQPVNNVVHCL-----------AHALAQV--EQGIERKFLKAPLGDEDA 1046

  Fly   310 SLSSAAIAALKEEVDSSDDEETSKKGEGPMWALFDHLYNAPGTSEHPGVTGPPLGNSLWKLPVRR 374
            .....|    |::....||:::|:|.:|               ||.        |..     |:.
Zfish  1047 KKDQKA----KKKDKKKDDDQSSEKDDG---------------SES--------GRQ-----VKT 1079

  Fly   375 FHPEYFELIKRPISMSQIHTKL----------------------KKGDYANISDLTADLYLMLDN 417
            ....:.|.:....|:||:...|                      :|||..|:        |:.|.
Zfish  1080 VQERWRESLLACTSLSQVFLHLSTLERSVAWAKSILNTRCKVCRRKGDAENM--------LLCDG 1136

  Fly   418 A------------KKAFPTS-----HRTHKDALKMLKLMNAKLV--EESLEEGSDLDDEDAEEMD 463
            .            .||.|:.     ....|..|..:.......|  ||.:|:..:.::||.||.:
Zfish  1137 CGRGYHIFCVRPKLKAVPSEDWFCPECRPKQRLNRINSRQRSSVDSEEEMEDEEESEEEDEEESE 1201

  Fly   464 TEVFTVSTQPEK---------------RKPGRPRINSNSNSNASHTPNNS-----NSPKSNRIAI 508
            .|..:...|.|:               .|.||    |||.|..:.:.|::     |:||.::.|.
Zfish  1202 EEEESEEEQSEEEEVPKKAAVKLPLQNNKGGR----SNSKSKQAESANSTSRSQQNTPKQSQPAN 1262

  Fly   509 NAAIK---KKILSIQKYLVDYSLGNR---------------------------------RPIEM- 536
            ....|   ||...:.........|||                                 |||.. 
Zfish  1263 KGGSKNSGKKATPVSNGKPPSRAGNRSSARLSLEVISTNDTTGKSEQSSPAAGNAESRKRPITAE 1327

  Fly   537 ------------------------------------------------FMEKPPRKIYPDYYDII 553
                                                            ||:...|...|||||||
Zfish  1328 VSPKSKIILAPTTTSSSRRSSGRNLGVHELSACELLSVDLVRHEDSWPFMKLVSRTQVPDYYDII 1392

  Fly   554 QNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPG 618
            :.||.::||...:....|....:.:.|..||||||.:||...:|..:....|:...:.:|:.. |
Zfish  1393 KKPIALSTIREKVNNCEYQTAAEYIEDVELMFSNCLEYNPHNTNEAKAGLRLQAFFHSELQRL-G 1456

  Fly   619 LTEGKKSQQK 628
            |.:.....||
Zfish  1457 LADRMTPPQK 1466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 27/159 (17%)
Bromo_polybromo_II 191..294 CDD:99948 23/123 (19%)
Bromo_polybromo_III 335..443 CDD:99951 21/146 (14%)
Bromo_polybromo_IV 512..613 CDD:99949 35/185 (19%)
Bromo_polybromo_V 641..733 CDD:99946
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
baz1aNP_001352072.1 WAC_Acf1_DNA_bd 23..122 CDD:313708
DDT 406..467 CDD:214726
WHIM1 570..615 CDD:317926
Neuromodulin_N <618..747 CDD:331332 10/56 (18%)
WSD 759..875 CDD:317927 15/122 (12%)
PHD_BAZ1A 1118..1163 CDD:277097 9/52 (17%)
Bromodomain 1353..1457 CDD:321986 27/104 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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