Sequence 1: | NP_651288.1 | Gene: | polybromo / 42954 | FlyBaseID: | FBgn0039227 | Length: | 1654 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006252748.1 | Gene: | Pbrm1 / 306254 | RGDID: | 1565549 | Length: | 1726 | Species: | Rattus norvegicus |
Alignment Length: | 1840 | Identity: | 638/1840 - (34%) |
---|---|---|---|
Similarity: | 955/1840 - (51%) | Gaps: | 325/1840 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLSRKRRASSISSRQDEDPLQLDD---STPEQSPVQQTTTQSARKKRRL------DPTELCQQLY 56
Fly 57 DSIRNIKKEDGSMLCDTFIRVPKRRQEPSYYDVVVNPIDLLKVQQKLKTDSYDDLDDLMADLELL 121
Fly 122 IGNAKAFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRARRMSRQVRRMTSSTEPGGDG 186
Fly 187 ATDDEYNQ--YEELFASVMTATDPVGDRLMHRMFQLLPSKKIYPDYYDVIEHPIDLRLIATKIQM 249
Fly 250 NAYSSLAEMERDLLQMTKNACLFNEPGSQIYKDAKSLKRIFTQRRIEL---EMGKGKLAKRVKSL 311
Fly 312 SSAAIAAL------KEEVD------------------------------SSDDEETS-------K 333
Fly 334 KGEGPMWAL---------FDHLYNAPGTSEHPGVTGPPLGNSLWKLPVRRFHPEYFELIKRPISM 389
Fly 390 SQIHTKLKKGDYANISDLTADLYLMLDNAKKAFPTSHRTHKDALKMLKLMNAKLVEESLEEGSDL 454
Fly 455 DDEDAEEMDTEVFTVSTQPEKRKPGRPRINSNSNSNASHTPNNSNSPKSNRIAINAAIKKKILSI 519
Fly 520 QKYLVDYSLGNRRP------IEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVV 578
Fly 579 SDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGRK-----LKT 638
Fly 639 AVIT---ERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQG 700
Fly 701 AYDTLDDLAADFLLMLENACKYNEPDSQIYKDALVLQQLTLQLKQQLRTERDS-LPDVPLAVQEL 764
Fly 765 FLTLFTTIYNHQDEEGRCYSDSLAELPEYDEIGEGPKVRGISLDLVKRRLDKGAYKRLDVYQEDI 829
Fly 830 FACLERARKLSRTDSDIFQDSIELQTYFIRKRDELCK--DTLSSSALNFSLERLMADVELCRQQK 892
Fly 893 MQQEEQDQEQDKEKDEFNAAKGE-----------------SMTINQQVFSPGDYVYVQMPE-NKI 939
Fly 940 PSICCIERLWTSPTNEKLMQASIFVRPHETYHVTTRKFLEKEVFKSSLSQTISMDKVQGMCYVMN 1004
Fly 1005 IKDYIKMRPENLPEKDVYVCESRYNIQGRWFKKLKSWP-PVREGSSVKFVPREQPLELKRVMSVF 1068
Fly 1069 ----KERLEKHKGELEELKLQETL-VEKEKPNVSCDPPPNAEVGSTYYQQ--YNTICSGAIKTGD 1126
Fly 1127 FVYVATQ-TGKQSVAQVQQIWEQNGKSYFKGPWLLPPSETTPGLGKQFYRQELLLSTVEEVSPVV 1190
Fly 1191 GIVGRCAVLEYSEFISSRPTEISESDVYICESVYDELKKALRKLVTGNMRKFQHSPSVTEDEIFY 1255
Fly 1256 FKTPIKPSK------DFKNELNELGMLE-DSMDGDTPSLSSDIAAMSSP-------APSVNS--- 1303
Fly 1304 ---TPLTSKVKAAK-SAKK-------CLTGYILYSSEVRKSICQSNPDATFGDISRMVGTEWKNL 1357
Fly 1358 PSSVKQSWEDRASR----QNEETAALRRELDDVQNSASPSS-------------QVSQDVFGQVL 1405
Fly 1406 TFECQWDKCDFQFEELSDCTEHCMSDSTGHIQRHPQAGVETEYVCLWRNCPRVKKSVQAFPNVLR 1470
Fly 1471 LIKHVREVHLSKCGKTISAADRSKNFVPRRQKHAQLATTVPIPPSLAQSPRAPSNLEAVQLQQQQ 1535
Fly 1536 HPQQNMHQLQQQQTIVLGPPPE----------------------PLFVTVPPRTTRVIHSEAYIK 1578
Fly 1579 YIESLQTGSHLNVVTCNNNW------RRALTHITPAQVVAKTALPEKWIGPNLRDQG---NVVQA 1634
Fly 1635 LCHLRNFMVDDILQIRRSCN 1654 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
polybromo | NP_651288.1 | Bromodomain | 46..158 | CDD:295360 | 55/117 (47%) |
Bromo_polybromo_II | 191..294 | CDD:99948 | 49/104 (47%) | ||
Bromo_polybromo_III | 335..443 | CDD:99951 | 35/116 (30%) | ||
Bromo_polybromo_IV | 512..613 | CDD:99949 | 50/106 (47%) | ||
Bromo_polybromo_V | 641..733 | CDD:99946 | 43/94 (46%) | ||
Bromo_polybromo_VI | 758..867 | CDD:99956 | 54/110 (49%) | ||
BAH_polybromo | 921..1040 | CDD:240068 | 57/119 (48%) | ||
BAH_polybromo | 1120..1234 | CDD:240068 | 44/114 (39%) | ||
HMG-box | 1320..1375 | CDD:238037 | 27/58 (47%) | ||
Pbrm1 | XP_006252748.1 | Bromo_polybromo_I | 65..177 | CDD:99954 | 54/112 (48%) |
Bromo_polybromo_II | 203..305 | CDD:99948 | 48/102 (47%) | ||
Bromo_polybromo_III | 404..505 | CDD:99951 | 33/102 (32%) | ||
Bromo_polybromo_IV | 556..659 | CDD:99949 | 49/105 (47%) | ||
Bromo_polybromo_V | 695..799 | CDD:99946 | 48/104 (46%) | ||
Bromo_polybromo_VI | 812..919 | CDD:99956 | 53/108 (49%) | ||
BAH_polybromo | 994..1111 | CDD:240068 | 57/116 (49%) | ||
BAH_polybromo | 1192..1310 | CDD:240068 | 45/122 (37%) | ||
HMG-box | 1417..1481 | CDD:238037 | 28/63 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166340678 | |
Domainoid | 1 | 1.000 | 121 | 1.000 | Domainoid score | I5598 |
eggNOG | 1 | 0.900 | - | - | E1_COG5076 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H10044 | |
Inparanoid | 1 | 1.050 | 952 | 1.000 | Inparanoid score | I318 |
OMA | 1 | 1.010 | - | - | QHG52483 | |
OrthoDB | 1 | 1.010 | - | - | D168080at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002672 | |
OrthoInspector | 1 | 1.000 | - | - | oto97303 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103614 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR16062 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X2912 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.770 |