DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and rsc4

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_595432.1 Gene:rsc4 / 2539999 PomBaseID:SPBC1734.15 Length:542 Species:Schizosaccharomyces pombe


Alignment Length:236 Identity:75/236 - (31%)
Similarity:121/236 - (51%) Gaps:7/236 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 KKKILSIQKYLVDYSLGNRRPI-EMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVED 576
            |.|...:.:.||........|. ::|.|.|.::.:||||.|||.||....:.:..:|.:|.::.|
pombe    12 KTKFDEVLEALVGLKDNEGNPFDDIFEELPSKRYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGD 76

  Fly   577 VVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGRKLKTAV- 640
            ...|.|||.||.:.||..||.:||.:.::....| .|:...|....:::::..|.:..:.|... 
pombe    77 FYDDIRLMVSNAQTYNMPGSLVYECSVLIANTAN-SLESKDGTLNEEENEEMESSINEEHKPGTN 140

  Fly   641 ---ITERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAY 702
               :.:.:....:.:.|.::.:| |.|..||..||||..|||||:||:.|:.:..:.::.|:|.|
pombe   141 EIDVPKVIQNILDALHEEKDEQG-RFLIDIFIDLPSKRLYPDYYEIIKSPMTIKMLEKRFKKGEY 204

  Fly   703 DTLDDLAADFLLMLENACKYNEPDSQIYKDALVLQQLTLQL 743
            .||:....|...|..||..||.|.|.:|:||..|.||:..|
pombe   205 TTLESFVKDLNQMFINAKTYNAPGSFVYEDAEKLSQLSSSL 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360
Bromo_polybromo_II 191..294 CDD:99948
Bromo_polybromo_III 335..443 CDD:99951
Bromo_polybromo_IV 512..613 CDD:99949 33/100 (33%)
Bromo_polybromo_V 641..733 CDD:99946 32/91 (35%)
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
rsc4NP_595432.1 COG5076 1..372 CDD:227408 75/236 (32%)
BROMO 9..112 CDD:197636 33/100 (33%)
BROMO 141..237 CDD:197636 34/96 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002672
OrthoInspector 1 1.000 - - oto101360
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR16062
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11130
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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