DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and F13C5.2

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_508124.1 Gene:F13C5.2 / 180410 WormBaseID:WBGene00017423 Length:374 Species:Caenorhabditis elegans


Alignment Length:260 Identity:63/260 - (24%)
Similarity:99/260 - (38%) Gaps:64/260 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 GRPRINSNSNSNASHTPNNSNSPKSNRIAINAAIK--------KKILSIQKYLV-----DYSLGN 530
            ||||.:.||:..|...|......|..:.......:        ||.|||.|...     .::...
 Worm    77 GRPRGSKNSDGGAGGPPAKRGRKKKAKSESEDEAESDHLHDELKKCLSILKEFEKSTHDSFTFPF 141

  Fly   531 RRPIEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEG 595
            |:|:::.:..     ..||:::|:.|:||:||...:..:.|....:...|::||.:||..||.||
 Worm   142 RKPVDVVLLG-----LTDYHEVIKKPMDMSTIRKKLIGEEYDTAVEFKEDFKLMINNCLTYNNEG 201

  Fly   596 SNIYEDANILERALNEK-LKEFP----------GLTEGKKSQQKYSKVGRKLKTAVITERLWQFY 649
            ..:.:.|....:....| .||||          |..||..::....:|..|.|.           
 Worm   202 DPVADFALQFRKKFAAKWKKEFPEDGDSFGQEKGEKEGSDNEDDEEEVDEKEKE----------- 255

  Fly   650 ETVKE-------YQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAYDTLDD 707
            |.|||       .:||           :.|.:.|..|:.|...|..:.|...::      |.|||
 Worm   256 EEVKEDNAEEKPAEEP-----------EQPDEKEEEDHEDEREEQEEEDSSDEE------DGLDD 303

  Fly   708  707
             Worm   304  303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360
Bromo_polybromo_II 191..294 CDD:99948
Bromo_polybromo_III 335..443 CDD:99951
Bromo_polybromo_IV 512..613 CDD:99949 28/114 (25%)
Bromo_polybromo_V 641..733 CDD:99946 16/74 (22%)
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
F13C5.2NP_508124.1 Bromodomain 118..219 CDD:383021 27/105 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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