DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and athp-2

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_494767.2 Gene:athp-2 / 173769 WormBaseID:WBGene00019217 Length:1412 Species:Caenorhabditis elegans


Alignment Length:868 Identity:167/868 - (19%)
Similarity:279/868 - (32%) Gaps:303/868 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KRRASSISSRQDEDPLQLDDSTPEQSPVQQTTTQSARKKRRLDPTEL----------CQQLYDSI 59
            |....:|:..:..|...||....|..|....:.......|.|..:|.          ..|:|..|
 Worm   731 KAHIKAINEGRRYDKEDLDAIVLESVPYASLSLDEIVTARELQKSEFKILMDSLISKMFQIYSKI 795

  Fly    60 RNIK-------------KEDGSMLCD--TFIRVPKRRQEPSYYDVVVNPIDLLKVQQKLKTDSYD 109
            .:|:             :...::|.:  ||..:.....|||..|   :|::||:.:.:       
 Worm   796 SDIRLGSDRAYRRYIVMENLSAILVETATFQELGIYCDEPSIID---DPLNLLENEHQ------- 850

  Fly   110 DLDDLMADLELLIGNAKAFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRARRMSRQVR 174
                   ::.:..||.....:.|  :..:..:.|.:|                     |...|..
 Worm   851 -------EVFICTGNMDTCRVHG--DESNNWTRWSYI---------------------RDREQFE 885

  Fly   175 RMTSSTEPGGDGATD--DEYNQYEELFASVMTATDPVGDRLMHR-------MFQLLPSKKIYPDY 230
            ::..|..|.|:...:  :|.|:|......::..|    :||...       ..|.:.:.....|.
 Worm   886 QLLKSLNPRGNREVELLEELNEYRPSLLEILEET----ERLHEEEEDEDEWKSQFMTNDPNPGDT 946

  Fly   231 YDV------------IEHPIDLRLIATKIQMNAYSSLAEME----RDLLQMTKNAC-LFNEPGSQ 278
            |::            .|..||      :.||.:...:.|..    ||.|:.:.|.| |.||..| 
 Worm   947 YNIDWDAEMRDLLLDFEEKID------QGQMGSIEKIFECNRIEWRDNLKESGNVCMLLNEDIS- 1004

  Fly   279 IYKDAKSLKRIFTQRRIELEMGKG-----KLA----KRVKSLSSAAIAALKEEVDSSDDEETSKK 334
                      ||.:..:.||..:.     |||    ..:||:....|.|                
 Worm  1005 ----------IFGEISVNLEESEHFSDSMKLAIAFYMIIKSIHLKFIKA---------------- 1043

  Fly   335 GEGPMWALFDHLYNAPGTSEHPGVTGPPL------------GNSLWKLPVRRFHPEYFELIKRPI 387
               |        |.:|...||..:....|            .:|...|.:..|...    ||...
 Worm  1044 ---P--------YISPNKDEHGNLKPSELFIRWQRALLECESHSALSLFISTFEGS----IKWDK 1093

  Fly   388 SMSQ------------------------IHTKLKKGDYANISDLTADLYLMLDNAKKAFPTSHRT 428
            |..|                        .|.|..|.|..  ||..||.......|::     .:.
 Worm  1094 SRLQGKCRSCRRKAAAHDLVLCSECDNCYHLKCAKLDVN--SDAPADWMCTSCRAQQ-----RKV 1151

  Fly   429 HKDALKMLKLMNAKLVEESLEEGSDLDDEDAEEMDTEVFTVSTQPEKRKPGRPRINSNSNSNASH 493
            ..:|.:|.: .:.:|.|.|.:|...:.:....:..:|:...:.:|               :.:..
 Worm  1152 ENEAKRMAR-DDDQLAESSSQEDVAIGNISISDNFSEIAPKTAEP---------------AESCS 1200

  Fly   494 TPNNSNSPKSNRIAINAAIKKKILS-IQKYLVDYSLGNRR-----PIEMFMEKPPRKIYPDYYDI 552
            ||..|..|.:.|.|...|:|:...| |.:.|   ||.||:     |:.. .|:|.|.:....:| 
 Worm  1201 TPTTSKEPPTIRTASGRAVKRVHYSDIHEGL---SLKNRKSNGSMPVTP-SERPVRNVSVRIFD- 1260

  Fly   553 IQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYE--------------DAN 603
            ::|        .|:.||     ||               :.:|.|..:              ..|
 Worm  1261 VEN--------ENVLTD-----ED---------------DSDGENTRKRKTPTSKKSVTSTPTTN 1297

  Fly   604 ILERALNEKLKEFPGLTEGKKSQQKYSKVGRKLKTAVITERLWQFYETVKEYQEPKGKRQLSLIF 668
            .:.|.:...:||            |.:.:...||.|:..|..|.|.:.|                
 Worm  1298 DISRVIIPNIKE------------KMTLIETLLKEAMRQECSWPFLQPV---------------- 1334

  Fly   669 TKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAYDTLDDLAADFLLMLENACKYNEPDSQIYKDA 733
                ...|.|||||:|:.|:::..:..|:||..|:...::..||.|:|.|...||||:::|||  
 Worm  1335 ----DSKEVPDYYDVIKRPMNLRTMMNKIKQRIYNKPIEVRNDFQLILSNCETYNEPENEIYK-- 1393

  Fly   734 LVLQQLTLQLKQQLRTERDSLPD 756
                 |:.:|...:....|.:.|
 Worm  1394 -----LSRELHDFMADRLDEIID 1411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 21/136 (15%)
Bromo_polybromo_II 191..294 CDD:99948 26/126 (21%)
Bromo_polybromo_III 335..443 CDD:99951 24/143 (17%)
Bromo_polybromo_IV 512..613 CDD:99949 23/120 (19%)
Bromo_polybromo_V 641..733 CDD:99946 28/91 (31%)
Bromo_polybromo_VI 758..867 CDD:99956
BAH_polybromo 921..1040 CDD:240068
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
athp-2NP_494767.2 WAC_Acf1_DNA_bd 23..123 CDD:402251
DDT 457..524 CDD:214726
WHIM1 629..671 CDD:406127
WSD 795..897 CDD:406128 22/141 (16%)
PHD 1100..1144 CDD:214584 8/45 (18%)
BROMO 1306..1409 CDD:197636 37/141 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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