DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment polybromo and sepa-1

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:NP_493339.1 Gene:sepa-1 / 173196 WormBaseID:WBGene00010808 Length:702 Species:Caenorhabditis elegans


Alignment Length:811 Identity:145/811 - (17%)
Similarity:264/811 - (32%) Gaps:265/811 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   532 RPIEMFMEKPPRKIYPDYYDIIQNPI---------DMNTIEHNIRTDRYAAVEDVVSDYRLMFSN 587
            :||  ..||.....|..|.|::::.:         .|....:..:||.:..|......|...|. 
 Worm    61 QPI--LTEKHISPYYAVYSDLLEDFVLFGYNTMTGKMEQFIYAFKTDCFVEVNRPEIKYNPAFL- 122

  Fly   588 CRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGRKLKTAVITERLWQFYETV 652
                  ...|:....|..|..|....::..||.  .|....|.:. |.|.||.:...      |:
 Worm   123 ------VKGNVVVALNGPEGELVVIERDCRGLL--SKESTSYGQF-RTLPTAALRTL------TL 172

  Fly   653 KEYQEPKGKRQLSLIFTKLPSKSE-----YPDYYD-----IIREPIDMDR---IAQKLKQGAYDT 704
            ::.:..:..|..:....|:.|.:|     |.:|..     .:|:.:.:::   .......|.|..
 Worm   173 QDLERDRWDRAANSDEVKISSGNESFDRLYAEYQKNLPRFQVRQCLHLNKEFLCVYSKTSGDYTR 237

  Fly   705 LD--DLAADFLLMLENACKYNEPDSQIYKDALVLQQLTLQLKQQLRTERDSLPDVPLAVQELFLT 767
            |:  |...||..:....|.....:|.:                           :||.|:.....
 Worm   238 LEYIDETGDFQKISCTLCTCEVTESNL---------------------------IPLYVERNASE 275

  Fly   768 LFTTIYNHQDEEGRCYSDSLAELPEYDEIGEGPKVRGISLDLVKRRLDKGAYKRLDVYQEDIFAC 832
            |...::|.::.:...|.        ||       ||......|||.|         ||.      
 Worm   276 LVIHVHNTENNQIEQYI--------YD-------VRTFGFVQVKRNL---------VYD------ 310

  Fly   833 LERARKLSRTDSDIFQDSIE-LQTYFI-RKRD-ELCKDTLSSSA------------------LNF 876
               .:|::...:....::|: .:.|.| |.|| .|.|:|..|..                  :..
 Worm   311 ---PKKITSGLNLFMAENIDNRKVYMIMRGRDGRLQKETSGSGGFEKMQPVAVKTFQVQWVEMKT 372

  Fly   877 SLERLMADVELCRQQKMQQEEQDQEQD---KEKDEFNAAKGESMTINQQVFSPGDYVYVQMPENK 938
            ..|:..|..|....|...|.|.:...:   ...:.||....:.:.:.|....|          .|
 Worm   373 EFEKKKASTERVEPQHPVQTEGEDIMETVLAMVESFNCDLRKELGLTQDQEIP----------RK 427

  Fly   939 IPSICCIERLWTSPTNEKLMQASIFVRPHETYHVTTRKFLEK-EVFKSSLSQTISMDKVQGMCYV 1002
            .|      |:.::.|.|.::                 |.||| ::.|.....|.:..:.......
 Worm   428 AP------RVESAETEENIV-----------------KNLEKLQIAKDPEEPTTAASEGGNTYGY 469

  Fly  1003 MNIKDYIKMRPENLPEKDVYVCESRYNIQGRWFKKLKSWPPVREGSSVKFVPREQPLELKRVMSV 1067
            ..:.|.:.   |.|.||:   .||::       :......||:   :|.:.|....::.|:....
 Worm   470 QELDDTMS---EGLLEKE---AESKH-------QDANEPEPVK---NVTYEPDVAAMDKKKKRRE 518

  Fly  1068 FKERLEKHKGELEELKLQ-----------------ETLVEKEKP----------NVSCDPPPNAE 1105
            .|.||.|...:::||:.:                 |...:.|.|          .:|.:..|..:
 Worm   519 LKSRLNKINAQIDELEKRRMERAGKKQVVSSSVPSEEAAQVEAPASPALAENTNQISNEETPKID 583

  Fly  1106 VGSTYYQQYNTICSGAIKTGDFVYVATQTGKQSVAQVQQIWEQNGKSYFKGPWLLPPSETTPGLG 1170
            :    ::.||         |.|:: .|.|.|:.:  |:.|     :::..|..|           
 Worm   584 I----FEGYN---------GSFLF-GTNTSKEWI--VEDI-----RNHMVGKLL----------- 616

  Fly  1171 KQFYRQELLLSTVEEVS-----PVVGIVGRC--AVLEYSEFISSRPTEISESDVY--ICESVYDE 1226
            |.|:.:   :..|||::     .::....:|  .:||.|          ::.|.|  :.:...|:
 Worm   617 KAFWPR---IQNVEEMNGELFKKLIANARKCETEILEAS----------NDRDEYYRLMQLTVDQ 668

  Fly  1227 -LKKALRKLVTGNMRKFQHS---PSVTEDEI 1253
             |||.|:|    :.|..:|:   |:.:.||:
 Worm   669 ILKKTLKK----DQRATEHNHQQPTQSSDEL 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360
Bromo_polybromo_II 191..294 CDD:99948
Bromo_polybromo_III 335..443 CDD:99951
Bromo_polybromo_IV 512..613 CDD:99949 17/89 (19%)
Bromo_polybromo_V 641..733 CDD:99946 16/106 (15%)
Bromo_polybromo_VI 758..867 CDD:99956 24/111 (22%)
BAH_polybromo 921..1040 CDD:240068 20/119 (17%)
BAH_polybromo 1120..1234 CDD:240068 25/123 (20%)
HMG-box 1320..1375 CDD:238037
sepa-1NP_493339.1 KIX 600..676 CDD:280354 21/106 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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