DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and pbrm1

DIOPT Version :10

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:XP_017945713.1 Gene:pbrm1 / 100145600 XenbaseID:XB-GENE-6450126 Length:1400 Species:Xenopus tropicalis


Alignment Length:1354 Identity:514/1354 - (37%)
Similarity:773/1354 - (57%) Gaps:156/1354 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRKRRASSISSRQDEDPLQLDDSTPEQSPVQQTTTQSARKKRR------LDPTELCQQLYDSIRN 61
            |::||.:|.||.....  ..||     ||...:|..|.||:||      :||..:|.:||::||:
 Frog    78 SKRRRTTSPSSSASGG--DFDD-----SPHSTSTPNSGRKRRRPANVASVDPIAVCHELYNTIRD 135

  Fly    62 IKKEDGSMLCDTFIRVPKRRQEPSYYDVVVNPIDLLKVQQKLKTDSYDDLDDLMADLELLIGNAK 126
            .|.|.|.:||:.|||.||||.:|.||:|:..||||:|:|||||.:.|||:..|.||.:||..|||
 Frog   136 YKDEQGRILCELFIRAPKRRNQPDYYEVISQPIDLMKIQQKLKMEEYDDVRLLTADFQLLFQNAK 200

  Fly   127 AFYIPGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRARRMSRQVRRMTSSTEPGGDGATDDE 191
            |:|.|.|.|::.|..|.......|...::.....|:|      ..:..:.:||..|     .::.
 Frog   201 AYYKPESPEYKAACKLLDVYLRTRNEFVQKGDCEEDE------EEEEAQESSSAAP-----EEEN 254

  Fly   192 YNQ--YEELFASVMTATDPVGDRLMHRMFQLLPSKKIYPDYYDVIEHPIDLRLIATKIQMNAYSS 254
            |.:  .|:|..||.:||.| |.||:..:||.||||..|||||.:|:.||||:.||.:||...|.|
 Frog   255 YLKPILEQLLESVTSATHP-GGRLISELFQKLPSKVHYPDYYAIIKDPIDLKTIAQRIQTGHYKS 318

  Fly   255 LAEMERDLLQMTKNACLFNEPGSQIYKDAKSLKRIFTQRRIEL---EMGKGKLAKRVKSLS---- 312
            :..|.:|:..:||||..:||||||::|||.::|::|..::.|:   |:||..|..|.|..:    
 Frog   319 VNAMAKDIDLLTKNAKTYNEPGSQVFKDANTIKKLFALKKTEVDSAEVGKSSLRSRNKRPAQGDR 383

  Fly   313 -SAAIAALKEEVDSSDD----------EETSKKGE---------GPMWALFDHLYNAPGTSEHPG 357
             ||...||:...:|.:|          ||...:||         .|::.|::.:.:....     
 Frog   384 LSAITMALQYGSESEEDASLNASSIRYEEAESEGESITSFMDISSPLYQLYETVRSCRNN----- 443

  Fly   358 VTGPPLGNSLWKLPVRRFHPEYFELIKRPISMSQIHTKLKKGDYANISDLTADLYLMLDNAKKAF 422
             .|..:..:.:.||.::.:|:|::.||.|:|:.||.||||..:|..:..|.:||.:|.:|||:..
 Frog   444 -RGQLIAEAFFHLPSKKKYPDYYQQIKSPVSLQQIRTKLKNQEYDGLDQLESDLNVMFENAKRYN 507

  Fly   423 PTSHRTHKDALKMLKLMNAKLVEESLEEGSDLDDEDAEEMDTEVFTVSTQPEKRKPGRPRINSNS 487
            ..:...:|...|:.:||.||..|.:..   |:|.||.:.|.:                   ::.|
 Frog   508 VPNSAIYKRVFKLQQLMQAKKKELARR---DIDIEDGDSMIS-------------------SATS 550

  Fly   488 NSNASHTPNNSNSPKSN-RIAINAAIKKKILSIQKYLVDYSLGNRRPIEMFMEKPPRKIYPDYYD 551
            ::.:|...:..|..|.. :|..|..::.:...          ..||..|:||.||.:|.|||||.
 Frog   551 DAGSSKRKSKKNMRKQRMKILFNTVLEAREPG----------SGRRLCELFMFKPSKKDYPDYYK 605

  Fly   552 IIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEF 616
            ||..|:|:.|||.|||||:||..|.::.|.:|||.|...||||||.:|.||::||:.|.||.||.
 Frog   606 IILEPMDLKTIEQNIRTDKYATEEAMMDDMKLMFRNAMHYNEEGSQVYNDAHVLEKVLKEKRKEL 670

  Fly   617 PGLTEGKKSQQKYSKVGRK-----LKTAVIT---ERLWQFYETVKEYQEPKGKRQLSLIFTKLPS 673
            ..|.:.........|:.||     .|:..::   .:|.:.||.||.|.:.:|:| ||.||.:|||
 Frog   671 GPLPDDDDMASPKLKLSRKSGISPKKSKYMSPMQHKLNEVYEAVKNYTDKRGRR-LSAIFLRLPS 734

  Fly   674 KSEYPDYYDIIREPIDMDRIAQKLKQGAYDTLDDLAADFLLMLENACKYNEPDSQIYKDALVLQQ 738
            :||.||||..|:.||||::|...:....|..||.:..||:.|..|||.||||:|.||||||||.:
 Frog   735 RSELPDYYLTIKRPIDMEKIRSHIMANKYQDLDAMCDDFVTMFNNACTYNEPESLIYKDALVLHK 799

  Fly   739 LTLQLKQQLRTERDS-LPDVPLAVQELFLTLFTTIYNHQDEEGRCYSDSLAELPEYDEIGEGPKV 802
            :.|:.::::..|.|| :|:|.|.:|||...||.::.:|||:|||||||||||:|..|.  :.||.
 Frog   800 VLLETRREIEGEDDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDP--KFPKR 862

  Fly   803 RGISLDLVKRRLDKGAYKRLDVYQEDIFACLERARKLSRTDSDIFQDSIELQTYFIRKRDELCK- 866
            ..::.|::::.::...|:|||::||.:|..|||||:|:||||:|::|::|||.:||:.|||||| 
 Frog   863 PPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRLNRTDSEIYEDAVELQQFFIKIRDELCKN 927

  Fly   867 -DTLSSSALNFSLERLMADVELCRQQKMQQEEQDQEQDKEKDEFNAAKGE--------------- 915
             :.|.|.||:::.:.|.:|||..:::|:.:|.::.:..:|:::..|.|.|               
 Frog   928 GEILLSPALSYTPKHLHSDVEKEKKEKLPKELEEDKAKREEEKKEAEKSEDPGGVSGQSGLYRTY 992

  Fly   916 --SMTINQQVFSPGDYVYVQMPE-NKIPSICCIERLWTSPTNEKLMQASIFVRPHETYHVTTRKF 977
              ..:....::..||||||:..| |.:|.|.||||||.....||.:....|.||:||:|:.||||
 Frog   993 SQDCSFKNSMYHVGDYVYVEPAEANLLPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKF 1057

  Fly   978 LEKEVFKSSLSQTISMDKVQGMCYVMNIKDYIKMRPENLPEKDVYVCESRYNIQGRWFKKLKSWP 1042
            ||||||||.....:.:.|:.|.|.||.:|:|.|:.|||..::|||||||||:.:.:.|||:|.|.
 Frog  1058 LEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKICPENFRDEDVYVCESRYSAKTKSFKKIKLWT 1122

  Fly  1043 -PVREGSSVKFVPREQPLELKRVMSVFKERLEKHKGELEELKLQET----------LVEKEKPNV 1096
             |:   |||:|..||.||.:.||.|||   ..|.|.| |:|.:..|          .:||||.:|
 Frog  1123 MPI---SSVRFRAREVPLPVVRVASVF---AAKDKAE-EDLPMDSTEENRDDDITQTLEKEKEDV 1180

  Fly  1097 SCDPPPNAEVGSTYYQQ--YNTICSGAIKTGDFVYVATQ-TGKQSVAQVQQIWEQNGKSYFKGPW 1158
            ..| .||.|.|..|:.|  ||.:.   :|.||.||:.:. ..:..|.:::::|.::|.:||.||.
 Frog  1181 PVD-MPNGEHGCYYFDQLRYNELW---LKVGDCVYIKSHGLVRPRVGRIEKMWVRDGAAYFFGPI 1241

  Fly  1159 LLPPSETTPGLGKQFYRQELLLSTVEEVSPVVGIVGRCAVLEYSEFISSRPTEISESDVYICESV 1223
            .:.|.||.....|.||::|:.||.:||..|:..|:|:|.||.:.:|:|.|||||.|:|:.:|||.
 Frog  1242 FIHPEETIHEPTKMFYKKEMFLSNLEESCPMTCILGKCGVLSFKDFLSCRPTEIPENDILLCESR 1306

  Fly  1224 YDELKKALRKLVTGNMRKFQHSPSVTEDEIFYFKTPIKPSKD----FKNELNEL 1273
            |:|..|.:::.  ..:::|..|..|.:|||:||:.||.|.|:    .:.:::||
 Frog  1307 YNETDKQMKRF--KGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIHEL 1358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:445827 52/111 (47%)
Bromo_polybromo_II 191..294 CDD:99948 50/104 (48%)
Bromo_polybromo_III 335..443 CDD:99951 32/116 (28%)
Bromo_polybromo_IV 512..613 CDD:99949 46/100 (46%)
Bromo_polybromo_V 641..733 CDD:99946 44/94 (47%)
Bromo_polybromo_VI 758..867 CDD:99956 55/110 (50%)
BAH_polybromo 921..1040 CDD:240068 59/119 (50%)
BAH_polybromo 1120..1234 CDD:240068 44/114 (39%)
HMG-box_PB1 1319..1376 CDD:438800
pbrm1XP_017945713.1 Bromo_polybromo_I 120..232 CDD:99954 52/111 (47%)
Bromo_polybromo_II 256..358 CDD:99948 49/102 (48%)
Bromo_polybromo_III 427..528 CDD:99951 30/106 (28%)
Bromo_polybromo_IV 564..667 CDD:99949 49/112 (44%)
Bromo_polybromo_V 703..807 CDD:99946 50/104 (48%)
Bromo_polybromo_VI 820..927 CDD:99956 54/108 (50%)
BAH_polybromo 1002..1119 CDD:240068 59/116 (51%)
BAH_polybromo 1202..1319 CDD:240068 44/121 (36%)
Blue background indicates that the domain is not in the aligned region.

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