DRSC/TRiP Functional Genomics Resources

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Protein Alignment polybromo and baz1b

DIOPT Version :9

Sequence 1:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster
Sequence 2:XP_002933656.2 Gene:baz1b / 100038181 XenbaseID:XB-GENE-853544 Length:1436 Species:Xenopus tropicalis


Alignment Length:1703 Identity:308/1703 - (18%)
Similarity:563/1703 - (33%) Gaps:575/1703 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 PGSSEHQDAVSLWQHIHSQRQRIMEANGLAEEEPRAR-----RMSRQVRRMTSSTEPGGDGATDD 190
            ||..|.:  |.:.:|              ::|..|:|     |:.|...|:.:....|....|..
 Frog    21 PGEGEEE--VYIIEH--------------SKEAFRSREEYESRLERYAERIWTCKSTGSSQLTHK 69

  Fly   191 EYNQYEELFASVMTATDPVG----------------DRLMHRMFQLLPSK---------KIYPDY 230
            |....|:....::....||.                |:|:.:.:..:.:|         ::.|:.
 Frog    70 EAWDEEQEVTELLKEEFPVWYEKQVLEMVHHNTISLDKLVDQSWMEIMTKYADGEECDFEVGPEK 134

  Fly   231 YDVIEHPIDLRLIATKIQMNAYSSLAEMERDLLQMTKNACLFNEPGSQIYKDAKSLKRIFTQRRI 295
            |        ||:...|:.     .|.:.|:...:.::.:|  :.|.|    |.::..::....::
 Frog   135 Y--------LRVTIVKVH-----PLEKEEQASEKKSEGSC--DSPSS----DKENSNKVAQDIQL 180

  Fly   296 ELEMGKGKLAKRVKSLSSAAIAALKEEVDSSDDEE-------TSKKGEGPMWA---LFDHLYNAP 350
            :.|      :.|.:||||     |:|    ||...       .|.|.|...|.   ...|.|:..
 Frog   181 KEE------SNRRESLSS-----LRE----SDRARRSPRKLPASLKKEEKKWVPPKFLPHKYDVK 230

  Fly   351 GTSEHPGVTGPPLGNSLWKLPVRRFHPEYFELIKRPISMSQIHTKLKKGDYAN------------ 403
            ..:|...::..|: :||:    |...|...|:::..|.    |..|:.|...|            
 Frog   231 LLNEDKVISFVPV-DSLY----RSERPPNKEILRYFIR----HNALRLGTGENAPWVVEDELVKK 286

  Fly   404 ------ISDLTAD--LYLMLD--NAKKAFPTSHRTHKDALKMLK--LMNAKLVEESLEEGSDLDD 456
                  .||...|  .|:.|:  :|.|........||.|.|..|  |..:...:.:|::......
 Frog   287 YSLPSKFSDFLLDPHKYMTLNPSSATKRKSLGSPDHKPAKKSKKSPLSPSSWCQVNLKKTGITSS 351

  Fly   457 EDAEEMD----TEVFTVSTQPEKRKP--GRPR-INSNSNSNASHTPNNS-NSPKSNRIAI--NAA 511
            ...|||.    ..:.....:.:|:||  |:.: :|....|..:.:|... .|||..::.:  .|.
 Frog   352 SSEEEMQLMNGANLNKKGKKSDKKKPKSGKSQLLNGQKVSGKARSPKKGLKSPKLKQMTLLDMAK 416

  Fly   512 IKKKILSIQKYLVDYSLGNRRPIEMFMEKPPRKIY-PDYYDIIQNPIDMNTIEHNIRTDRYAAVE 575
            ...|:...||........:.:|.:..   ||..:: ..||...:|           |.||.:|:.
 Frog   417 TTPKVSRAQKGGASTPRSSSKPHKYL---PPAALHLISYYRDNKN-----------REDRKSALS 467

  Fly   576 DVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGRKLKTAV 640
            .::|....|.|            .||    .:.|.::|:|.        .|::|..:..:.:.||
 Frog   468 ALISKVARMLS------------AED----RKRLPDELQEL--------VQKRYELLEHRKQWAV 508

  Fly   641 ITERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAY--- 702
            :||      |..:||...|.:...:.|..|             .||....:|..:..||..|   
 Frog   509 MTE------EQRQEYMSKKREALKARIKEK-------------ARERKQKEREERLEKQKRYEDQ 554

  Fly   703 -------------DTLDDLA----ADFLLMLENACKYNE---PDSQIYKDALVLQQLTLQLKQQL 747
                         ||.:.|.    .|..:::|....|.:   ||.|....|       :.:.:.|
 Frog   555 ELTGKSLPTFKLVDTPEGLPNALFGDVAMVIEFLSGYADLLLPDGQYPVTA-------VSIMEAL 612

  Fly   748 RTERDSLPDVPLAVQELFLTLFTTIYNHQDEEGRCYSDSLAELPEYDEIG----EGPKVRGISLD 808
            ..|:...    :.:..:.:.|..|:.  |||        :||  :|.|:|    |.|.....:.:
 Frog   613 AAEKGGF----MYLNRVLVVLLQTLL--QDE--------IAE--DYGELGMKLSEIPLTLHSASE 661

  Fly   809 LVK---RRLDKGAYKRLDVYQEDIFACLERARKLSRTDSD---IFQDSIELQTYFIRKRD----- 862
            ||:   |:.|..|.:.....:||             .||:   ::||. |::..::.|.:     
 Frog   662 LVRLCLRKSDSPAGESESTEKED-------------EDSEGSAVYQDD-EVEDEYLEKMETSEFF 712

  Fly   863 ELCKDTLSSSALNFSLERLMADVELCRQQKMQQEEQD---------------------QEQDKEK 906
            ||..:           |:|...|.||.:..|....||                     :|.||::
 Frog   713 ELTTE-----------EKLHILVALCHRILMTYSVQDHVDTKQQRSGELWKERLAILKEENDKKR 766

  Fly   907 DEFNAAKGE-SMTINQQVFSPGDYVYVQMPENKIPSICCIERLWTSPTNEKLMQASIFVRPHETY 970
            .|....|.: ||...::|.: ...|..|...|.:......|.: .|....:.:||....:..|.:
 Frog   767 AEKQRRKEQGSMKPKEEVVA-SKVVKKQEKTNTMQQDNDTEDM-ISAVKSRRLQAIQAKKEKEEH 829

  Fly   971 HVTTRKFLEKEVFKS-SLSQTISMDKV--QGMCYVMNIKDYIKMRPENLPEKDVYVCESRY---- 1028
            ...|::.||:|..:. |..|..|.:|.  :|   :...|..::..|......     .:||    
 Frog   830 QKLTKERLEREAEEERSRKQKASAEKAFHEG---IAKAKLVLRRSPLGTDRN-----HNRYWLFS 886

  Fly  1029 -NIQGRWFKKLKSWPPVREGSSVKFVPREQPLELKRVMSVFKERLEKHK-----------GELEE 1081
             .:.|.:.:  |.|  |.:..:.:|.|.|...|       :::..|:.:           ....|
 Frog   887 DEVPGLFIE--KGW--VHDSINYRFSPPESEQE-------YEQDAEESEDADSSVGCPDDSTQRE 940

  Fly  1082 LKLQETLVEKEKPNV--SCDPPPNAE--VGSTYYQ-------------QYNTI------------ 1117
            .|..|..|.|:..|:  .||.....:  :.|.:.|             :|..|            
 Frog   941 GKTVEMTVPKQGQNLWFLCDTQKELDELLDSLHLQGFRESQLKERLQNRYQDIMHSIHLARKQNL 1005

  Fly  1118 ----CSGAIKTGDFVYVATQTGKQSVAQVQQIWEQNGKSYFKGPWLLPPSETTPGLGKQFYRQEL 1178
                |.|..:..:|:       :..:.:|....::.|..|.        .:||     :|   |.
 Frog  1006 GLKTCDGQQELLNFL-------RSDIIEVATRLQKGGLGYL--------DDTT-----EF---EA 1047

  Fly  1179 LLSTVEEVSPVVGIVGRCAVLEYSEFISSRPTEISESDVYICESVYDELKKALRKLVTGNMRKFQ 1243
            .:.|:|.:.                       :..|..|::..:|   :||.|:..:....:|.:
 Frog  1048 KVRTLENLK-----------------------DFGECIVFLQAAV---IKKFLQGFMAPKQKKRK 1086

  Fly  1244 H------SPSVTEDE-------------IFYFKTPIKPSKDFKNELNELGMLEDSMDGDTPSLSS 1289
            |      :.:..:||             :..:||.|:.::.|......||||:..:..|   :||
 Frog  1087 HQSEEAAAKAEEQDEEKKMAEEAKVASAVEKWKTAIRDAQTFSRMHVLLGMLDACIKWD---MSS 1148

  Fly  1290 DIAAMSSPAPSVNSTPLTSKVKAAKS-------AKKCLTGY-------ILYSSEVRKSICQSNPD 1340
            :.|              ..||...|.       ..:|...:       :|::....:.:|.:...
 Frog  1149 ENA--------------RCKVCRKKGEDDKLILCDECNKAFHLFCLRPVLFNIPDGEWLCPACQP 1199

  Fly  1341 ATFGDISR---------------------------------MVGTEWKNLPSS------------ 1360
            ||....||                                 |:|...::..::            
 Frog  1200 ATARRSSRGRNYAEDSTQDEEEEEEESEEEEEVESEEEEQEMMGQRLRSRKAAKAKPGRPARRGR 1264

  Fly  1361 -VKQSWEDRASRQN--EETAALRRELDDVQNSASPSS-------QVSQDVFGQVLTFECQWDKCD 1415
             .|.|.:.|.|||.  |:..|   :::::...:.|:|       |..:::..:::.:...|   .
 Frog  1265 PPKNSNQSRVSRQRYVEDNEA---DVEEMVRQSKPTSRRQNQELQKCEEILAKLIKYRFSW---P 1323

  Fly  1416 FQFEELSDCTEHCMSDSTGHIQRHPQAGVETEYVCLWRNCPRVKKSVQAFPNVLRLIKHVREVHL 1480
            |:....:|..|..|     ::..:|......:..|   :|... ::||.|.|.|:|:....|::.
 Frog  1324 FREPVNTDEIEDYM-----NVVTNPMDFQTMQSKC---SCGSY-QTVQEFLNDLKLVFGNTELYY 1379

  Fly  1481 SKCGKTISAADRSKNFVPRRQKHAQLATTVPIPPSLAQSPRAPSNLEAVQLQQQQHPQQNMHQLQ 1545
            ......:|..::::          |.|..:           ...:|.|       |..|..|:..
 Frog  1380 EPGSSQLSCLEKTE----------QCARDL-----------LGKHLPA-------HTYQRRHRKH 1416

  Fly  1546 QQQTIVLGPPPEP 1558
            |      .|.|||
 Frog  1417 Q------APEPEP 1423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360 5/26 (19%)
Bromo_polybromo_II 191..294 CDD:99948 18/127 (14%)
Bromo_polybromo_III 335..443 CDD:99951 29/134 (22%)
Bromo_polybromo_IV 512..613 CDD:99949 19/101 (19%)
Bromo_polybromo_V 641..733 CDD:99946 23/114 (20%)
Bromo_polybromo_VI 758..867 CDD:99956 27/123 (22%)
BAH_polybromo 921..1040 CDD:240068 23/126 (18%)
BAH_polybromo 1120..1234 CDD:240068 17/113 (15%)
HMG-box 1320..1375 CDD:238037 14/109 (13%)
baz1bXP_002933656.2 WAC_Acf1_DNA_bd 28..126 CDD:402251 17/111 (15%)
PTZ00121 <457..863 CDD:173412 103/512 (20%)
WHIM1 696..741 CDD:406127 12/56 (21%)
tolA <737..>865 CDD:236545 27/132 (20%)
WSD 868..990 CDD:406128 22/137 (16%)
PHD_BAZ1B 1152..1197 CDD:277098 6/44 (14%)
Bromo_WSTF_like 1304..1400 CDD:99937 19/128 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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