DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ets96B and Gabpa

DIOPT Version :10

Sequence 1:NP_996290.1 Gene:Ets96B / 42952 FlyBaseID:FBgn0039225 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001102311.1 Gene:Gabpa / 363735 RGDID:1310802 Length:454 Species:Rattus norvegicus


Alignment Length:146 Identity:61/146 - (41%)
Similarity:88/146 - (60%) Gaps:3/146 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 ISSTYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAISQRRGSLQLWQFLVALLDEPT 512
            |.::.||| .|..:....||....::.:....:|...||.|.. :...|.:||||||:.||.: .
  Rat   272 IPASVPSA-TPTTIKVINSSAKAAKVQRSPRISGEDRSSPGNR-TGNNGQIQLWQFLLELLTD-K 333

  Fly   513 TSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNYDKLSRSLRYYYEKGIMQKVNGERYVYR 577
            .:..||:|.|...||||.:||.||::||.:||:|.|||:||||:|||||:..::.||.|:|:||:
  Rat   334 DARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 398

  Fly   578 FVCDPDALFNMAYGHL 593
            ||||...|...:...|
  Rat   399 FVCDLKTLIGYSAAEL 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ets96BNP_996290.1 ETS 497..583 CDD:197710 47/85 (55%)
GabpaNP_001102311.1 GABP-alpha 40..119 CDD:463311
SAM_PNT-GABP-alpha 168..254 CDD:176084
ETS 319..403 CDD:197710 46/84 (55%)
Blue background indicates that the domain is not in the aligned region.

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