DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tld and Pcolce2

DIOPT Version :9

Sequence 1:NP_524487.2 Gene:tld / 42945 FlyBaseID:FBgn0003719 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_083896.1 Gene:Pcolce2 / 76477 MGIID:1923727 Length:414 Species:Mus musculus


Alignment Length:330 Identity:99/330 - (30%)
Similarity:154/330 - (46%) Gaps:64/330 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 CGGDLKLTKDQS-IDSPNYPMDYMPDKECVWRITAPDNHQVALKFQSFELEKHDGCAYDFVEIRD 541
            |||  .||.:.. |.|..:|..|.|:.:|.|:||.|:...|.|.|:..:||..:.|.||||::.:
Mouse    32 CGG--ILTGESGFIGSEGFPGMYPPNSKCTWKITVPEGKVVVLNFRFIDLENDNLCRYDFVDVYN 94

  Fly   542 GNHSDSRLIGRFCGDKLPPNIKTRSNQMYIRFVSDSSVQKLGFSAALMLDVDECKFTDHGCQHLC 606
            | |::.:.||||||...|.::....|:|.::.:||:                             
Mouse    95 G-HANGQRIGRFCGTFRPGSLVASGNKMTVQMISDA----------------------------- 129

  Fly   607 INTLGSYQCGCRAGYELQANGKTCEDACGGVVDATKSNGSLYSPSYPD-VYPNSKQCVWEVVAPP 670
             ||.||   |..|.|...|.....:..|||.::  |.:|:..:|::|| .||....|||.::||.
Mouse   130 -NTAGS---GFMATYSAAAPDGKGDRYCGGRLE--KPSGTFKTPNWPDRDYPVGVTCVWHIIAPK 188

  Fly   671 NHAVFLNFSHFDLEGTRFHYTKCNYDYLIIYSKMRDNRLKKIGIYCGHELPPVVNSEQSILRLEF 735
            |..:.|.|..||:|  |.:|  |.|||:.:::....|..|:||.|||...|..:.||::.|.::|
Mouse   189 NQLIELKFEKFDVE--RDNY--CRYDYVAVFNGGEVNDAKRIGKYCGDSPPVPIVSERNELLIQF 249

  Fly   736 YSDRTVQRSGFVAKF-----------VIDVDECSMNNGG-------CQHRCRNTFGSYQCS-CRN 781
            .||.::...||:..:           ...|........|       ||.:||. .|:.:.: |.:
Mouse   250 LSDLSLTADGFIGHYKFRPKKFPTTTTTPVTTTLPVTTGLKPTVALCQQKCRR-MGTLESNYCSS 313

  Fly   782 GYTLA 786
            .:.||
Mouse   314 NFVLA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tldNP_524487.2 ZnMc_BMP1_TLD 137..338 CDD:239808
Astacin 144..339 CDD:279708
CUB 388..474 CDD:214483
CUB 478..586 CDD:278839 38/108 (35%)
FXa_inhibition 595..630 CDD:291342 8/34 (24%)
CUB 634..750 CDD:278839 43/116 (37%)
FXa_inhibition 757..792 CDD:291342 9/38 (24%)
CUB 797..906 CDD:278839
CUB 910..1023 CDD:278839
Pcolce2NP_083896.1 CUB 32..142 CDD:238001 45/145 (31%)
CUB 153..264 CDD:278839 43/116 (37%)
NTR_PCOLCE 291..414 CDD:239631 8/29 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.993157 Normalized mean entropy S7146
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.