DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tld and astl2c

DIOPT Version :9

Sequence 1:NP_524487.2 Gene:tld / 42945 FlyBaseID:FBgn0003719 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_001037864.1 Gene:astl2c / 594901 XenbaseID:XB-GENE-6449741 Length:496 Species:Xenopus tropicalis


Alignment Length:541 Identity:161/541 - (29%)
Similarity:259/541 - (47%) Gaps:104/541 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VPPKEPKDDIYQLKTTRQHSGRRRKQ-----SHKSQNKAALRLPPPFLWTDDAVDVLQHSHSPTL 126
            ||..:  ||::. :..|.:.|:|...     :||. :::|:.. ...||..|:..::.       
 Frog    36 VPDND--DDVFG-RILRANKGKRNFHVQGDIAHKF-SRSAINC-KECLWPKDSNGIVN------- 88

  Fly   127 NGQPIQRRRRAVTVRKERTWDYGVIPYEIDTIFSGAHKALFKQAMRHWENFTCIKFV-ERDPNLH 190
                                    :||.|.:.:|....:|...||:.:...||::|: :.|.:  
 Frog    89 ------------------------VPYTISSDYSQNEASLIMAAMQEFATLTCVQFIPQTDED-- 127

  Fly   191 ANYIYFTVKNCGCCSFLGKNGNGRQPISIGR-NCEKFGIIIHELGHTIGFHHEHARGDRDKHIVI 254
             :||.....: ||.|::|.|| |.|.:|:|: .|..:|:|.|||.|.:||.|||:|.|||.::.|
 Frog   128 -DYIAIQPLD-GCWSYIGVNG-GAQQVSLGKGGCIYYGVIQHELNHVLGFVHEHSRSDRDNYVHI 189

  Fly   255 NKGNIMRGQEYNFDVLSPEEV--------DLPLLPYDLNSIMHYAKNSFSKSPYLDTITPIGIPP 311
                       |:..:||:.:        |...|.||.:|:|||...|:|.:...:||.||   |
 Frog   190 -----------NYQYISPDNIAFFDKKDTDNLGLEYDYSSVMHYPGYSYSNTTGKNTIVPI---P 240

  Fly   312 GTHLELGQRKRLSRGDIVQANLLYKCASCGRTYQQNSGHIVSPHFIYSGNGVLSEFEGSGDAGED 376
            ..::.:|||..||..|:.:.|.||:|..|.:.:...||.:.|.::                .|..
 Frog   241 NANVPIGQRYGLSTLDVSKINRLYQCDVCSKLFTNASGTVTSANY----------------PGSY 289

  Fly   377 PSAESEFDASLTNCEWRITATNGEKVILHLQQLHLMSSDDCTQDYLEIRDGYWHKSP-LVRRICG 440
            ||.        .:|.:.|...:|: |.:......:.||::|..||:.|.||....|| ::.:|||
 Frog   290 PSN--------ADCVFLIRVPSGQ-VSMTFNAFDVQSSNNCISDYITIYDGSSRSSPVMLGKICG 345

  Fly   441 NVSGEV--ITTQTSRMLLNYVNRNAAKGYRGFKARF-EVVCGGDLKLTKDQSIDSPNYPMDYMPD 502
              :|::  :.:.|:.||:.:|...|..| .||||.: .|.|||.. .|..::|.||.||..|.|:
 Frog   346 --TGQIPPLISSTNLMLVEFVTDGAIAG-TGFKASYTSVQCGGTY-FTPSRNITSPGYPNSYPPN 406

  Fly   503 KECVWRITAPDNH-QVALKFQSFELEKHDGCAYDFVEIRDGNHSDSRLIGRFCGDKLPPNIKTRS 566
            .:|.:.||||..: :|:|...||.||....|.||::::.||..::|.|:|.:||......:.||.
 Frog   407 MDCSYVITAPPPYKRVSLIMYSFTLESAPYCRYDYLQVYDGVSTNSPLMGTYCGTMSFSKVITRG 471

  Fly   567 NQMYIRFVSDSSVQKLGFSAA 587
            |.|.:.|.||.|.|..||.|:
 Frog   472 NSMLLHFSSDYSNQFQGFQAS 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tldNP_524487.2 ZnMc_BMP1_TLD 137..338 CDD:239808 67/210 (32%)
Astacin 144..339 CDD:279708 68/204 (33%)
CUB 388..474 CDD:214483 28/88 (32%)
CUB 478..586 CDD:278839 43/108 (40%)
FXa_inhibition 595..630 CDD:291342
CUB 634..750 CDD:278839
FXa_inhibition 757..792 CDD:291342
CUB 797..906 CDD:278839
CUB 910..1023 CDD:278839
astl2cNP_001037864.1 ZnMc_hatching_enzyme 84..266 CDD:239810 67/231 (29%)
Astacin 89..266 CDD:279708 67/195 (34%)
CUB 270..380 CDD:238001 34/137 (25%)
CUB 383..495 CDD:238001 44/111 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.