DRSC - DRSC Integrative Ortholog Prediction Tool

DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tld and pcolce

DIOPT Version :10

Sequence 1:	NP_524487.2	Gene:	tld / 42945	FlyBaseID:	FBgn0003719	Length:	1067	Species:	Drosophila melanogaster
Sequence 2:	NP_001008157.1	Gene:	pcolce / 493519	XenbaseID:	XB-GENE-997163	Length:	470	Species:	Xenopus tropicalis

Alignment Length:	26	Identity:	7/26 - (26%)
Similarity:	11/26 - (42%)	Gaps:	9/26 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly   137 VQYSTDTTFEHIT---------FTSP 153
            :||.....|:::|         ||.|
Frog    97 IQYMESQKFKYLTLRTSWQYFLFTCP 122

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tld	NP_524487.2	ZnMc_BMP1_TLD	137..338	CDD:239808	7/26 (27%)
		CUB	388..474	CDD:214483
		CUB	478..586	CDD:395345
		FXa_inhibition	595..630	CDD:464251
		CUB	634..750	CDD:395345
		FXa_inhibition	757..792	CDD:464251
		CUB	797..906	CDD:395345
		CUB	910..1023	CDD:395345
pcolce	NP_001008157.1	CUB	35..146	CDD:238001	7/26 (27%)
		CUB	157..269	CDD:238001
		PRK13808	<278..385	CDD:172341
		NTR_PCOLCE	345..470	CDD:239631
Blue background indicates that the domain is not in the aligned region.

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