DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tld and hch-1

DIOPT Version :9

Sequence 1:NP_524487.2 Gene:tld / 42945 FlyBaseID:FBgn0003719 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_510440.1 Gene:hch-1 / 181564 WormBaseID:WBGene00001828 Length:605 Species:Caenorhabditis elegans


Alignment Length:450 Identity:115/450 - (25%)
Similarity:180/450 - (40%) Gaps:68/450 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SECDFDFK--EQPEDFFGILDSSLVPPKEPKDDIYQLKTTRQHSGRRRKQSHKSQNKAALRLPPP 107
            |..||:.|  .:|::...:.:..:|...|..|.|  :|..|.....|:..:::            
 Worm    65 SALDFEDKIESKPDEIPYLFEGDMVLTDEQMDLI--IKNVRDQYWARKSSTNE------------ 115

  Fly   108 FLWTDDAVDVLQHSHSPTLNGQPIQRRRRAVTVRKERTWDYGVIPYEIDTIFSGAHKALFKQAMR 172
            ||:   |:                 |.:|::|......|.:.| ||.||| .||.:.......:.
 Worm   116 FLY---AI-----------------RGKRSMTSFLSERWSFPV-PYYIDT-SSGVNTNAVLAGVA 158

  Fly   173 HWENFTCIKFVERD---PNLHANYIYFTVKNCGCCSFLGKNGNGRQPISIGRNCEKFGIIIHELG 234
            .||..||.:|...:   .:...|.:.|...| ||.|.:||.....|.:|||..|...|.:.||:|
 Worm   159 KWEQETCARFTRLNSYSSSSRQNALRFISGN-GCYSNIGKVSRFPQDVSIGWGCTSLGTVCHEIG 222

  Fly   235 HTIGFHHEHARGDRDKHIVINKGNIMRGQEYNFDVLSPEEVDLPLLPYDLNSIMHYAKNSFSKSP 299
            |.:||:||.||.|||.::.|...||.......|...|...:....:.||..|:|||.:.:||.:.
 Worm   223 HALGFYHEQARYDRDDYVSILTQNIQDMYLSQFTKQSASSMVDYGVGYDYGSVMHYDQAAFSSTG 287

  Fly   300 YLDTITPIGIPPGTHLELGQRKRLSRGDIVQANLLYKCASCGRTYQQNSGHIVSPHFI------- 357
            .....|.   .|.....:|||...|..|:.:.|..|..::|.......:|..::|:..       
 Worm   288 GNTIATR---DPNFQATIGQRVAPSFADVKRINFAYCNSTCSNYLDCQNGGYINPNDCNNCKCPP 349

  Fly   358 -YSGN-----GVLSEFEGSGDAGEDPSAESEFDASLTNCEWRITATNGEKVILHLQQLHLMSSDD 416
             :.|.     |..|...|:||.....|.::...:....|.:.|.|..|.||...:..........
 Worm   350 GFGGQLCDVAGTNSNGCGAGDITATSSIQTISASGALTCNYVIKAPVGAKVYFQMTAATFSRYSP 414

  Fly   417 CTQDYLEIRDGYWHKSPLVRRICGNVSGEVITTQTSRMLLNYVNRNAAKGYRGFKARFEV 476
            ||.:||||..|. ..|.:..|.|.:.. .:..::|:.:::.|      ||..|  |||.:
 Worm   415 CTTNYLEINYGR-DFSRVGARFCASYP-TISLSETNTLVVIY------KGVNG--ARFSL 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tldNP_524487.2 ZnMc_BMP1_TLD 137..338 CDD:239808 64/203 (32%)
Astacin 144..339 CDD:279708 63/197 (32%)
CUB 388..474 CDD:214483 22/85 (26%)
CUB 478..586 CDD:278839
FXa_inhibition 595..630 CDD:291342
CUB 634..750 CDD:278839
FXa_inhibition 757..792 CDD:291342
CUB 797..906 CDD:278839
CUB 910..1023 CDD:278839
hch-1NP_510440.1 Astacin 132..323 CDD:279708 63/196 (32%)
ZnMc_astacin_like 135..320 CDD:239807 61/190 (32%)
CUB 386..466 CDD:214483 24/88 (27%)
TSP1 533..565 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3714
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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