DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tld and cubn

DIOPT Version :9

Sequence 1:NP_524487.2 Gene:tld / 42945 FlyBaseID:FBgn0003719 Length:1067 Species:Drosophila melanogaster
Sequence 2:XP_012821080.2 Gene:cubn / 100125884 XenbaseID:XB-GENE-957007 Length:3631 Species:Xenopus tropicalis


Alignment Length:899 Identity:226/899 - (25%)
Similarity:367/899 - (40%) Gaps:244/899 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 IVINKGNIMRGQEYNFDVLSPEEVDLPLLPYDLNSIMHYAKNSFSKSPYLDTITPI--------- 307
            |.|..||::|                  |.:|..::.|....|:......|:.:.|         
 Frog   970 ISIPPGNLIR------------------LTFDSFNLEHGYSCSYDYLDIYDSASAIMESRIGRFC 1016

  Fly   308 --GIPPGTHLELGQRKRLSRGDIVQANL-----------------LYKCASCGRTYQQNSGHIVS 353
              .|||..         .|||:.:...|                 |....:|..:|.:.||...|
 Frog  1017 GRSIPPSI---------TSRGNTMTVLLVTDTNTAVEGFSARYTSLNATTACDASYTEASGIFSS 1072

  Fly   354 PHF--IYSGNGVLSEFEGSGDAGEDPSAESEFDASLTNCEWRITATNGEKVILHLQQLHLMSSDD 416
            |::  .|..|                          ..|.:.||....::::|:.....|.:|.:
 Frog  1073 PNYPNRYPNN--------------------------LECIYTITVETNKQILLNFTTFVLSTSTN 1111

  Fly   417 CTQDYLEIRDGYWHKSPLVRRICGNVSGEVITTQTSRMLLNYVNRNAAKGYRGFKARFEVV---C 478
            |.:|::|||||.:..|||:.:.|.. ...||.:.::::.:.: ..:::....||.|.::..   |
 Frog  1112 CDKDHVEIRDGGYEISPLLGKFCQG-PPPVIVSHSNKLWVKF-RSDSSYSETGFSAHWDSATTGC 1174

  Fly   479 GGDLKLTKDQSIDSPNYPMDYMPDKECVWRITAPDNHQVALKFQSFELEKHDGCAYDFVEIRDGN 543
            ||.| .:......|||:||.|..:.||.|::.|.......::|:.|:||.|..|..|::.:.|||
 Frog  1175 GGTL-TSVSGGFTSPNFPMPYYHNSECYWQMMASSGSTFEIQFEHFDLESHSNCQNDYLAVYDGN 1238

  Fly   544 HSDSRLIGRFCGDKLPPNIKTRSNQMYIRFVSDSSVQKLGFSAALMLDVDECKFTDHGCQHLCIN 608
            .:.|.|:.:.||.:||..|::..:.:|::|.:|:|:...||.|                      
 Frog  1239 TTHSHLLEKLCGKRLPDPIRSSGSNVYVKFRTDNSISFSGFFA---------------------- 1281

  Fly   609 TLGSYQCGCRAGYELQANGKTCEDACGGVVDATKSNGSLYSPSYPDVYPNSKQCVWEVVAPPNHA 673
                                |.:..|.||:.|.:|.|.|.|.:||:.||:::||.|.:.|...:.
 Frog  1282 --------------------TYKQTCQGVMIANRSRGILESLNYPNSYPHNQQCNWTIQATLGNT 1326

  Fly   674 VFLNFSHFDLEGTRFHYTKCNYDYLIIYSKMRDNRLKKIGIYCGHELPPVVNSEQSILRLEFYSD 738
            :...|:.|::||    |..|| ||:.:|.. .|.:.:.||.|||::|||...:..:.|.:.|:||
 Frog  1327 INYTFTTFNVEG----YFSCN-DYVQLYDG-PDKQARLIGTYCGNQLPPSGTTTGTSLHVVFHSD 1385

  Fly   739 RTVQRSGFVAKFVIDVDECSMNNGGCQHRCRNTFGS----------------------------- 774
            .|:.|.||..::.::         ||.......|||                             
 Frog  1386 DTITRPGFQMQWYVN---------GCGEELSGPFGSFTSPGFPMRYPDNRECIWHIQTSPGSSIQ 1441

  Fly   775 ---------YQCSC---------------------------RNGYTLAENGHNCTETRCKFEITT 803
                     |..:|                           .|...::..|:..|   .:|: |.
 Frog  1442 ITIWEFNIEYHSTCSYDVLEIYGGPGVSSPRLAQLCAPRPQENPLQVSSTGNTMT---VRFK-TD 1502

  Fly   804 SY-------------------------GVLQSPNYPEDYPRNIYCYWHFQTVLGHRIQLTFHDFE 843
            :|                         |.:.|||||..|..|..|.|..:...|||:.|||.||:
 Frog  1503 AYVSGRGFNTTWREIPGGCGGVFQAPNGEIHSPNYPRPYEDNTECSWVIRVDFGHRVLLTFRDFD 1567

  Fly   844 VESHQECIYDYVAIYDGRSENSSTLGIYCGGREPYAVIASTNEMFMVLATDAGLQRKGFKATFVS 908
            :|||..|.:|.|.::||....:..|.:.||.:.|.|:.::.|.||:.|.:|...|.:||.|.|..
 Frog  1568 IESHSSCSFDSVTVFDGPDNEADPLAVLCGTQLPAAISSTQNTMFVRLRSDGSNQHRGFSAKFTE 1632

  Fly   909 ECGGYLRATNHSQTFYSHPRYGSRPYKRNMYCDWRIQA-DPESSVKIRFLHFEIEY-SERCDYDY 971
            .||..:.|.:...|. |.|.|.:. |..|..|.|.||| :|.:.|.:.|...|||: ::.|..||
 Frog  1633 ACGSLITADSIGATI-SSPLYPAN-YPNNQNCMWIIQAQEPYNHVTLSFTDLEIEFRNDNCTLDY 1695

  Fly   972 LEITEEGYSMNTIHGRFCGKHKPPIIISNSDTLLLRFQTDESNSLRGFAISFMA 1025
            :||.:.......:.||:||:..|..|.|.|:.|:::|.::.|.|.:||..:|.|
 Frog  1696 VEILDGNNPDAPVQGRYCGRTIPHPITSFSNALVVKFVSNNSTSAKGFHATFAA 1749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tldNP_524487.2 ZnMc_BMP1_TLD 137..338 CDD:239808 19/113 (17%)
Astacin 144..339 CDD:279708 19/114 (17%)
CUB 388..474 CDD:214483 22/85 (26%)
CUB 478..586 CDD:278839 37/107 (35%)
FXa_inhibition 595..630 CDD:291342 0/34 (0%)
CUB 634..750 CDD:278839 43/115 (37%)
FXa_inhibition 757..792 CDD:291342 9/99 (9%)
CUB 797..906 CDD:278839 43/133 (32%)
CUB 910..1023 CDD:278839 39/114 (34%)
cubnXP_012821080.2 cubilin_NTD 28..133 CDD:412063
EGF_CA <138..166 CDD:238011
EGF_CA 169..210 CDD:238011
EGF_CA 262..305 CDD:214542
EGF_CA 306..349 CDD:214542
EGF_3 354..388 CDD:403986
EGF_CA 398..432 CDD:238011
EGF_CA 434..470 CDD:238011
CUB 476..589 CDD:238001
CUB 594..705 CDD:238001
CUB 712..821 CDD:395345
CUB 825..935 CDD:238001
CUB 940..1052 CDD:238001 18/108 (17%)
CUB 1059..1167 CDD:238001 30/135 (22%)
CUB 1174..1283 CDD:238001 38/151 (25%)
CUB 1287..1399 CDD:238001 43/117 (37%)
CUB 1402..1515 CDD:238001 12/116 (10%)
CUB 1521..1631 CDD:238001 40/109 (37%)
CUB 1634..1749 CDD:238001 40/116 (34%)
CUB 1754..1864 CDD:238001
CUB 1868..1976 CDD:238001
CUB 1994..2104 CDD:238001
CUB 2108..2228 CDD:238001
CUB 2233..2347 CDD:238001
CUB 2352..2461 CDD:238001
CUB 2468..2580 CDD:238001
CUB 2586..2702 CDD:238001
CUB 2705..2816 CDD:238001
CUB 2821..2931 CDD:238001
CUB 2933..3041 CDD:238001
CUB 3044..3154 CDD:395345
CUB 3164..3279 CDD:238001
CUB 3284..3399 CDD:238001
CUB 3402..3514 CDD:238001
CUB 3519..3631 CDD:238001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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