DRSC/TRiP Functional Genomics Resources

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Protein Alignment slo and Kcnu1

DIOPT Version :9

Sequence 1:NP_001262924.1 Gene:slo / 42940 FlyBaseID:FBgn0003429 Length:1217 Species:Drosophila melanogaster
Sequence 2:XP_017455870.1 Gene:Kcnu1 / 680912 RGDID:1585877 Length:1123 Species:Rattus norvegicus


Alignment Length:1206 Identity:449/1206 - (37%)
Similarity:638/1206 - (52%) Gaps:188/1206 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 FLLSSIFTFLAGLLVVLLWRAFAFVCCRKEPDLGPN------DPKQKEQKASRNKQEFEGTFMTE 93
            |:|||:.||..||:|:.::|....:....:...||.      ..::.|....| |..|.|.|   
  Rat    27 FILSSLATFFGGLIVLFIFRIALKISRNWKTVKGPRGILELFSSRRIEVNPLR-KLYFHGVF--- 87

  Fly    94 AKDWAGELISGQTTTGRILVVLVFILSIASLIIYFVDASSEEVERCQKWSNNITQQIDLAFNIFF 158
             ::....|:|.||..|::||:|||:|||.||:|||:: |.:.|.:|..:.:.|. .:||:||.||
  Rat    88 -RERIEMLLSAQTIVGQVLVILVFVLSIGSLVIYFIN-SMDPVRKCSSYEDKIV-HVDLSFNAFF 149

  Fly   159 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLN 223
            ..||.:||.||.||:.|.|||.|.||.|||||:|:|.||...|:||||||||||:.:|.|||.|.
  Rat   150 SFYFGLRFWAAEDKIKFWLEMNSIVDIFTIPPTFISYYLKSNWLGLRFLRALRLLELPKILQILQ 214

  Fly   224 VLKTSSSIRLAQLVSIFISVWLTAAGIIHL----------LENSGDP-LDFNNAHRLSYWTCVYF 277
            |:|||:|::|::|:||.||.|.||||.:||          :|||||| |:..|:..:||:..:|.
  Rat   215 VIKTSNSVKLSKLMSIVISTWFTAAGFLHLTFPLPSLFGQVENSGDPWLNGRNSQTMSYFESIYL 279

  Fly   278 LIVTMSTVGYGDVYCETVLGRTFLVFFLLVGLAVFASWIPEITELAAQRSKYGGTYSKDPRKRHI 342
            :..||||||:|||..:|.|||.|:|||.|..|.:||::|||:.||.:.|.||...|.....|:.|
  Rat   280 VTATMSTVGFGDVVAKTSLGRIFIVFFTLGSLILFANYIPEMVELFSTRKKYNKPYEAVKGKKFI 344

  Fly   343 VVCGHITYESVSHFLKDFLHEDREDVDVEVVFLHRKEPDLELEGLLKRHYTTVAFFQGTMMNAVD 407
            ||||:||.:||:.||::|||....::::|:|||....|.:|||.|||.|.:...|..||.:...|
  Rat   345 VVCGNITIDSVTAFLRNFLHRKAGEINIEIVFLGEAPPSVELETLLKCHTSCTTFVCGTALKFED 409

  Fly   408 LERVKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 472
            |:||.|..|:|||:|||.:|.|...||.:|||||:|||||....|||||::|..||.:|..||:|
  Rat   410 LKRVAVENAEACLILANPFCSDLHDEDNSNIMRVLSIKNYYPQTRVIIQMLQSQNKVFLSRIPNW 474

  Fly   473 DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPDTQAWQNDYLQGTGCEMYTE 537
            :|..||::||.||||||||||.||.||..|.:..||..::.|..| ...||..:|.|...::.|:
  Rat   475 NWSAGDNIICFAELKLGFIAQGCLVPGLCTFLTTLFIEQNQKVFP-KHPWQKHFLNGLKNKILTQ 538

  Fly   538 TLSPSFTGMTFPQASELCFSKLKLLLLAIEIKGAEEGADSKISINPRG-AKIQANTQGFFIAQSA 601
            .||..|.||||||.|.|||.|:.|:|:||:.|.......|.| :||.. .::..:|.|||||:|:
  Rat   539 RLSNDFVGMTFPQVSRLCFLKMHLMLIAIQHKPLFHNCCSLI-LNPSSQVRLNKDTLGFFIAESS 602

  Fly   602 DEVKRAWFYCKACHEDIKDETLIKKCKCKNYVGMIMMQTGMVNQGITSVMNTMEDEHHPAPTFTP 666
            .:||||.|||..||.|:.:..||.||.|||                                   
  Rat   603 KDVKRALFYCSNCHSDVCNPELIGKCGCKN----------------------------------- 632

  Fly   667 PELPKRVHVRGSVSGDITRDREDTNLLNRNVRRPNGTGNGTGGMHHMNNTAAAAAAAAAAGKQVN 731
                              |.|:..                                         
  Rat   633 ------------------RSRQQL----------------------------------------- 638

  Fly   732 KVKPTVNVSRQVEGQVISPSQYNRPPENDANPYAGYQLAYEVKKLMPTSRSSGTGTQNQNGGV-- 794
             |.||:.|.                 ::..|.:|            ||:....:.::.|...|  
  Rat   639 -VAPTIMVM-----------------QSSLNEFA------------PTAEIYTSISREQTSSVTI 673

  Fly   795 ----SLPAGIADDQSKDFDFEKTEMKYDSTGMFHWSPAKSLEDCILDRNQAAMTVLNGHVVVCLF 855
                ::|...|||..          ..||:|||||..:..|:..:|.|:..|......|:|.|:|
  Rat   674 LTTRNMPVDTADDSD----------MLDSSGMFHWCRSMPLDKVVLKRSDKATHEFQNHIVACVF 728

  Fly   856 ADPDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLSRADL 920
            .|..|.|:||||.||||||||:...|||.:|.:||::|.:|||:.|:|.|||.::.||.|...||
  Rat   729 GDAHSSLMGLRNFVMPLRASNYTRQELKDIVFIGSLEYFQREWRFLRNFPKIHIMPGSALYTGDL 793

  Fly   921 RAVNVNLCDMCCILSAKVPSNDDPTLADKEAILASLNIKAMTFDDTIGVLSQRGPEFDNLSATAG 985
            .||||..|.||.||:....:.....|.|.|.|:|:|||:|:.....:...|::  |.:.      
  Rat   794 HAVNVEQCSMCVILATPYKALSSQLLVDTETIMATLNIQALRISCPMSGSSKK--EVNT------ 850

  Fly   986 SPIVLQRRGSVYGANVPMITELVNDSNVQFLDQDDDDD---PDTELYLTQPFACGTAFAVSVLDS 1047
            ||...:..|......:|::|||.|.||:.|::|.|..|   ..|.|:|:..|:.||.|:.:.|||
  Rat   851 SPTFSKYEGKQRYQQIPILTELKNPSNIHFIEQMDGLDEAIKGTSLHLSTAFSTGTVFSGTFLDS 915

  Fly  1048 LMSTTYFNQNALTLIRSLITGGATPELELILAEGAGLRGGYSTVESLSNRDRCRVGQISLYDGPL 1112
            |::|.::|.:.|.|::.|:|||...:.|..|.:.....|.......||.|.||::|.:||.:..|
  Rat   916 LLATAFYNYHVLELLQMLVTGGINSQTEHCLVKEKLYEGNEGGATFLSGRTRCKLGLLSLDETIL 980

  Fly  1113 AQFGECGKYGDLFVAALKSYGMLCIGLYRFRDTSSSCDASSKRYVITNPPDDFSLLPTDQVFVLM 1177
            :.......:|.||..:|.:.|:||:||||..|.... ::..||:|||.|.::..|||:|.||..:
  Rat   981 SDIKPKKTFGQLFCGSLDNLGILCVGLYRMMDEGEH-NSERKRFVITRPANECHLLPSDLVFCAI 1044

  Fly  1178 QF---------DPGLEYKPPAVRAPAGGRGTNTQGS 1204
            .|         :..::.:.......:..:|:|.||:
  Rat  1045 PFSITCDKSESNASIQDQDTTTNVTSMSQGSNFQGA 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sloNP_001262924.1 Ion_trans 110..321 CDD:395416 116/221 (52%)
BK_channel_a 470..566 CDD:397526 47/95 (49%)
Kcnu1XP_017455870.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1420
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53496
OrthoDB 1 1.010 - - D41052at33208
OrthoFinder 1 1.000 - - FOG0003516
OrthoInspector 1 1.000 - - otm45069
orthoMCL 1 0.900 - - OOG6_101271
Panther 1 1.100 - - O PTHR10027
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.790

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