DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slo and slo-1

DIOPT Version :9

Sequence 1:NP_001262924.1 Gene:slo / 42940 FlyBaseID:FBgn0003429 Length:1217 Species:Drosophila melanogaster
Sequence 2:NP_001256802.1 Gene:slo-1 / 180203 WormBaseID:WBGene00004830 Length:1160 Species:Caenorhabditis elegans


Alignment Length:1206 Identity:743/1206 - (61%)
Similarity:877/1206 - (72%) Gaps:133/1206 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 CLKVRKYWCFLLSSIFTFLAGLLVVLLWRAFAFVCCRK------EPDLGP--------------- 69
            ||:.|||||||||||.||.|.:::|::||....:||::      ||...|               
 Worm    39 CLEERKYWCFLLSSITTFCASMILVVIWRVVTHLCCQRREKEFVEPIPAPEAVQINMNGSKHAPS 103

  Fly    70 -NDP--KQKEQKASRNKQEFEGTFMTEAKDWAGELISGQTTTGRILVVLVFILSIASLIIYFVDA 131
             .||  ||:|:|        ...:|||||||||||||||:.|||.||:|||||||.||||||.||
 Worm   104 ETDPFLKQQEEK--------HLGWMTEAKDWAGELISGQSLTGRFLVLLVFILSIGSLIIYFYDA 160

  Fly   132 SSE--EVERCQKWSNNITQQIDLAFNIFFMVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVS 194
            |.:  :||.|..|.::.:|||||.|||||:|||||||||||||:||:|||||::|:||||||||:
 Worm   161 SFQNFQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVA 225

  Fly   195 IYLDRTWIGLRFLRALRLMTVPDILQYLNVLKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGD 259
            |||.|.|:|.|||||||||||||||||||:|||||||||.|||:||::|.||.||::||||||||
 Worm   226 IYLQRNWLGFRFLRALRLMTVPDILQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGD 290

  Fly   260 PL-DFNNAHRLSYWTCVYFLIVTMSTVGYGDVYCETVLGRTFLVFFLLVGLAVFASWIPEITELA 323
            .. .|.|.||::|...|||::||||||||||:||.|:.||.|::||:|.|||:|||::|||.:|.
 Worm   291 FFKGFINPHRITYADSVYFVLVTMSTVGYGDIYCTTLCGRLFMIFFILFGLAMFASYVPEIADLI 355

  Fly   324 AQRSKYGGTYSKDPRKRHIVVCGHITYESVSHFLKDFLHEDREDVDVEVVFLHRKEPDLELEGLL 388
            ..|.||||.|..:..|:||||||||||:||||||:|||||||:|||||||||||..||||||||.
 Worm   356 GNRQKYGGEYKGEHGKKHIVVCGHITYDSVSHFLQDFLHEDRDDVDVEVVFLHRVVPDLELEGLF 420

  Fly   389 KRHYTTVAFFQGTMMNAVDLERVKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRV 453
            |||:|.|.||.||:|:::||.|||:.:|||||||||||..:|||||||||||||||||||.||||
 Worm   421 KRHFTKVEFFTGTVMDSLDLSRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRV 485

  Fly   454 IIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPD 518
            |:||||||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||.
 Worm   486 IVQLMQYHNKAYLLNIPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPH 550

  Fly   519 TQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASELCFSKLKLLLLAIEIKGAEEGADSKISINP 583
            |..|.||||:|.|.|||||:|||||..|:||:|:.|.|::|.|||||||:|. ||..:..|:|||
 Worm   551 TPLWLNDYLRGAGMEMYTESLSPSFANMSFPEAANLLFNRLGLLLLAIELKD-EENKECNIAINP 614

  Fly   584 RGAK--IQANTQGFFIAQSADEVKRAWFYCKACHEDIKDETLIKKCKCKNYVGMIMMQTGMVNQG 646
             |..  ||..||||||||||||||||:|:||.||:||||.:|||||||||..             
 Worm   615 -GPHIVIQPQTQGFFIAQSADEVKRAFFWCKQCHDDIKDVSLIKKCKCKNLA------------- 665

  Fly   647 ITSVMNTMEDEHHPAPTFTPPELPKRVHVRGSVSGDITRDREDTNLLNRNVRRPNGTGNGTG--- 708
                                                         |..||.:..........   
 Worm   666 ---------------------------------------------LFRRNTKHSTAAREKNAKIS 685

  Fly   709 ------GMHHMNNTAAAAA-----AAAAAGKQVNKVKPTVNVSRQVEGQVISPSQYNRPPENDAN 762
                  .:.:.|:..|...     ..|.||       |..::.:||:.::|  :|.:...:...|
 Worm   686 DYSDFDALFYQNDARATDVLQQFQPQAPAG-------PMGHLGQQVQLRMI--NQQSSTSDTHLN 741

  Fly   763 PYAGYQLAYEVKKLMPTSRSSGTGTQNQNGGVSLPA-GIADDQSKDFDFEKTEMKYDSTGMFHWS 826
            . ...:.|||:|||||   ||| |.:|   .:|:|. |...|.||||:.:..:|||||||||||.
 Worm   742 T-KSLRFAYEIKKLMP---SSG-GRRN---SMSIPPDGRGVDFSKDFEQQFQDMKYDSTGMFHWC 798

  Fly   827 PAKSLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSV 891
            |:::||||:|:|:||||||||||||||||||.|||||||||.:||||:|||||||||||||||.:
 Worm   799 PSRNLEDCVLERHQAAMTVLNGHVVVCLFADQDSPLIGLRNFIMPLRSSNFHYHELKHVVIVGDL 863

  Fly   892 DYIRREWKMLQNLPKISVLNGSPLSRADLRAVNVNLCDMCCILSAKVPSNDDPTLADKEAILASL 956
            :|:|:|||.|.||||||:|||||||||||||||:||||||.|:||:||:.:|.||||||||||||
 Worm   864 EYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVIISARVPNTEDTTLADKEAILASL 928

  Fly   957 NIKAMTFDDTIGVLSQRGPEFDNLSATAGSPIVLQRRGSVYGANVPMITELVNDSNVQFLDQDDD 1021
            |||||.||||:|....|....|.  :..||||.:|::|:.:|.||||||||||||||||||||||
 Worm   929 NIKAMQFDDTLGFFPMRHQTGDR--SPLGSPISMQKKGAKFGTNVPMITELVNDSNVQFLDQDDD 991

  Fly  1022 DDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNQNALTLIRSLITGGATPELELILAEGAGLRG 1086
            ||||||||||||||||||||:|||||||||||||.:||||||:|:||||||||||||||||||||
 Worm   992 DDPDTELYLTQPFACGTAFAISVLDSLMSTTYFNDSALTLIRTLVTGGATPELELILAEGAGLRG 1056

  Fly  1087 GYSTVESLSNRDRCRVGQISLYDGPLAQFGECGKYGDLFVAALKSYGMLCIGLYRFRDTSSSCDA 1151
            ||||.|:||||||||:.||||.|.|.........||.:|..||:.||.|||||||..|..:  ..
 Worm  1057 GYSTPETLSNRDRCRIAQISLQDNPYDGVVHNTTYGAMFTIALRRYGQLCIGLYRLHDQDN--PD 1119

  Fly  1152 SSKRYVITNPPDDFSLLPTDQVFVLMQFDPGLEYKP 1187
            |.|||||||||.:..:..||.|:||.||||||||:|
 Worm  1120 SMKRYVITNPPAELRIKNTDYVYVLEQFDPGLEYEP 1155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sloNP_001262924.1 Ion_trans 110..321 CDD:395416 150/213 (70%)
BK_channel_a 470..566 CDD:397526 76/95 (80%)
slo-1NP_001256802.1 Ion_trans 139..360 CDD:366146 152/220 (69%)
BK_channel_a 509..584 CDD:367524 62/74 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164763
Domainoid 1 1.000 624 1.000 Domainoid score I85
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1693
Inparanoid 1 1.050 1398 1.000 Inparanoid score I56
Isobase 1 0.950 - 0 Normalized mean entropy S2986
OMA 1 1.010 - - QHG53496
OrthoDB 1 1.010 - - D124461at2759
OrthoFinder 1 1.000 - - FOG0003516
OrthoInspector 1 1.000 - - oto19184
orthoMCL 1 0.900 - - OOG6_101271
Panther 1 1.100 - - LDO PTHR10027
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8765
SonicParanoid 1 1.000 - - X5164
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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