DRSC/TRiP Functional Genomics Resources

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Protein Alignment puf and Usp47

DIOPT Version :9

Sequence 1:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:1410 Identity:278/1410 - (19%)
Similarity:482/1410 - (34%) Gaps:441/1410 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2013 GYVGLTNLGATCYMASCVQHLYMMPQARAAVLRVP---PNAARKHGPTLLELQRMFAYLLESERK 2074
            |||||.|...|||:.|.:|.|:|.|:.|.|:.|..   .|.| |:.|  .:||::|..|..|.:.
  Fly   394 GYVGLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEA-KNIP--YQLQKLFLNLQTSPKA 455

  Fly  2075 SYNPRSFCRVYQMDHQPLNTGEQKDMAEFFIDLVSKLEDMTPDLK--HLVKRLFCGSLSNNVVSL 2137
            :.......|.:..|  .....:|.|:.|....:...||....:.|  :|:..|:.|.:::.|..|
  Fly   456 AVETTDLTRSFGWD--STEAWQQHDIQELCRVMFDALEHKFKNTKQANLISNLYEGKMNDYVKCL 518

  Fly  2138 DCGHVSRTAED-FYTVRCQV------ADMRNLQESLDEVTVKDTLEGDNMYTCSQCGKKVRAEKR 2195
            :| :..:|.|| |..:...|      :...:::|:|......:||:|:|.|.|.:|.||..|.|.
  Fly   519 EC-NTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKCKKKCDAHKG 582

  Fly  2196 ACFKKLPQILCFNTMRYTFNMVTMLKEKVNTHFSFPLRLNMCHYVEKTLMPQQYKEERERRQKEK 2260
            ..||..|.||..:..|:.|:..||.:.|:|...:||..||:..::.::....:...:......:.
  Fly   583 LHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNSQLNGTVDDC 647

  Fly  2261 EGAD-GSGDGNDN-----------EKAEATLDDDIEEC----------------YEYELVGVTVH 2297
            ..|| ||...:||           .:.|..|:|:.|..                |.|||..:.:|
  Fly   648 STADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIH 712

  Fly  2298 TGTADGGHYYSFIKERTKTSYHTHERWFLFNDAEVKPFDPSQIAAECFGGEMTSKTYDSVTEKYL 2362
            :|:|.|||||::||:      ..:..||.|||..|.......| ...|||...|         |.
  Fly   713 SGSASGGHYYAYIKD------FDNNEWFCFNDQNVTSITQEDI-QRSFGGPNGS---------YY 761

  Fly  2363 DFSFEKTNSAYMLFYERRLPEHLQRRHSELLVTPTPSP----TVEEKSEAEEPTKMETSSSEIKA 2423
            ..::..:.:||||.|.:     :..:.:||:......|    |:..|..:||.|::......|..
  Fly   762 SSAYTSSTNAYMLMYRQ-----VDAKRNELVAKVADFPEHIKTLLPKLHSEEETRVSRLGRHITV 821

  Fly  2424 DVDVEVEVEEKDKEKPAQTDTESKETPAKEEIADDKSKQDEPEEKKIEKQSREGEEKSETDE--- 2485
                 .::...|..||                   :.....|..||: |.:|....:|....   
  Fly   822 -----TDLALPDLYKP-------------------RVYFYNPSLKKM-KITRVYVSQSFNINLVL 861

  Fly  2486 -KPTEMTTVSTEEEKQPTANCDNHQQNNNSNS-----KASNDQQPSTSKAAQKLQL-FRPLLNKE 2543
             ...||..|   |:..|.:.|.....|::.::     ::..|...:..:|||...| |  ||...
  Fly   862 MSAYEMLNV---EQFAPLSRCRLVAYNSSMDTIIQSLESCTDPALTELRAAQNYSLDF--LLEYR 921

  Fly  2544 LEDWIWQDNRQFLQDRNIFEH---TYFNFMWQIC------GHIPQSLISETDVT-----CMAAKL 2594
            .||          |:..::..   |::.|...:.      ..:..|...|.:.:     .:|.:|
  Fly   922 AED----------QEFEVYPPNGITWYVFKVDLSTMAMDGPFLVYSAAREREASDVLRRSIALRL 976

  Fly  2595 SVS---FFIET--------FIHAKEKPTMVPWVELLTKQFNASQEACEWFLSHMSQEPYWPVQVL 2648
            .:|   |.:.|        |:.....||... ::.|....|...::..:|..::.......:::|
  Fly   977 HISEQQFLLATVRATVPKAFVSYDPHPTPEA-LQHLQNMANTQFKSITYFYLNVPNTDAATLEML 1040

  Fly  2649 -------IQC----------------PNQMVR------QMFQRLVIHVIQQLRASHAHLYLEVET 2684
                   ::|                |..|..      :.::|.::..:.|...||.|   |..:
  Fly  1041 GVPTVESVECASGGDVVDAAMMNGVAPGHMSSSNDYDWRRYKRDLVEPMSQPSPSHGH---ESNS 1102

  Fly  2685 DED-----DKELIGQASCVTRFIG-SLISLLEHGARANLRHLSEYFGLLCEFSRMGDEEAMY--L 2741
            ::.     |:.|:...:...|..| |.:|...|..               :.|...||.|.:  :
  Fly  1103 EDSSLSDGDRTLVETDNMAHRGGGDSQVSSTSHSP---------------QLSSPEDEAASHDAM 1152

  Fly  2742 LRIG------------------VLKSLVDFYLGHKQTDSIDI---SSDNEDNSSEEALSVEKMRP 2785
            :|:.                  :|.:..:.:....:.:.:|:   .|.:...|.|||   :..:|
  Fly  1153 MRVHAYCNGNGSYAAADVVDPLLLPTSTNHFFYATKVECVDVVGTGSSSGHQSDEEA---QLRKP 1214

  Fly  2786 ASLDKMIALCASLVERSRGADFRLRLSPKDFSAIAGGKGFPFLYQQIKD-GINPHQTKHLIHALC 2849
            ....|::.          |...|:....|....:.......|..|:..| .::.:|...|:|.: 
  Fly  1215 TRAYKLLV----------GTHMRMGAFKKHIEQLIQVPAAHFKLQRKHDNNLSNNQNNSLVHLI- 1268

  Fly  2850 RWDERLATQIIGMLFASVTKHTELCAP--FFKLLTLLTETQGGPVGLPCFTQLILPRMWDAAEYC 2912
             ..|.|..::     ....:..|..|.  |.:|..:..||.    .|||                
  Fly  1269 -EGETLTVEL-----GKTLEPDEFKAKIHFLRLADIDNETS----KLPC---------------- 1307

  Fly  2913 PQSVLDWL------SLQATKNKIAHAWILQSAEKWLEQFLLAHDNTRVRNAAAFLLVALVPSQPF 2971
               |.:|:      :.||.|..:|.          |.:....:....|:|...:|....:|.   
  Fly  1308 ---VCEWVYNANTTAEQAKKELVAK----------LHRIDAKYATLSVQNCRIWLKGGRIPI--- 1356

  Fly  2972 RANFRAHSQHKLLALNPHSYRDINSD--AQAVLHQV------------ITLLLRLLRPARV---- 3018
                      |:|:.:...|.|:.|.  |:.::.:.            :||.:|...||::    
  Fly  1357 ----------KILSDDETLYCDMRSSIAAEFIVQECEEEVDPQPKDDSLTLFVRRWCPAKLEFGK 1411

  Fly  3019 YADIGAHGTTKLTAYFNLLSYCMVSKTEKLMASSYMR------------------SLWELFHPRL 3065
            :.:|.....:::....:.:|...:.|.      |||:                  |.|.      
  Fly  1412 FQEITLDQDSEIRLSLSQISDIPIDKL------SYMKLNSNFPCTSISALSVNESSSWY------ 1464

  Fly  3066 SEPSVPAHHNKHALLTFWHHSLVDCPENAAQVANCPEITRNIAFNYILADHDDAEIVTYNRSMLP 3130
               |||...:|:             |.|:.|..|                     |..|....:|
  Fly  1465 ---SVPTTLDKY-------------PLNSTQTGN---------------------IYLYKDRTVP 1492

  Fly  3131 AYYGLLRLCCEQSRALTRQLSQHQNLQWAFKNITPHPTQYAAAVDELFKLMALFATRHPDASEQE 3195
            |                |:|:..:.                       :||        :|.|:.
  Fly  1493 A----------------RELTLEER-----------------------RLM--------NAREKA 1510

  Fly  3196 KLDVTQFRRAVIVSYTSSLDARVSWSTLISALKILVDNEEDRTMV 3240
            :||     |...||.|.....|.      .||||.:|:.|..:.|
  Fly  1511 RLD-----RVGCVSTTRYAQRRE------RALKIYLDSPEKSSNV 1544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 114/408 (28%)
UCH 2014..2377 CDD:278850 112/402 (28%)
DUF3517 2723..>2877 CDD:288853 27/179 (15%)
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188
Rib_recp_KP_reg 122..265 CDD:282899
peptidase_C19C 394..780 CDD:239124 114/412 (28%)
UCH 395..776 CDD:278850 112/402 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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