DRSC/TRiP Functional Genomics Resources

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Protein Alignment puf and Usp5

DIOPT Version :9

Sequence 1:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster
Sequence 2:NP_001246589.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster


Alignment Length:496 Identity:84/496 - (16%)
Similarity:149/496 - (30%) Gaps:194/496 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly  2013 GYVGLTNLGATCYMASCVQHLYMMPQ---------ARAAVLRVPPNAARKHGPTLLEL-----QR 2063
            ||.|:.|||.:||:.|.:|.|:::|.         |.......|.:.|......:.:|     ..
  Fly   330 GYTGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSG 394

  Fly  2064 MFAYLLES-----ERKSYNPRSFCRVYQMDHQPLNTGEQKDMAEFFIDLVSKLE-------DMTP 2116
            .::.:.|:     .....:|..|..:...:|...:|.:|:|..:|::.|::.|:       :...
  Fly   395 KYSSIAENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRNSRNQTNPAD 459

  Fly  2117 DLKHLVKRLFCGSLSNNVVSLDCGHVSRTAEDFYTVRCQVA--------DMRNLQE--------- 2164
            .||.|        |.:.|..|....|.....:.|:.|..|.        ::|..||         
  Fly   460 ALKFL--------LEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREFQERKKAARETG 516

  Fly  2165 ----SLDEVTVKDTLEG-----------DNMYTCSQCGKKVRAEKRACFKKLPQILCFNTMRYTF 2214
                ..|.|..|..|:.           :..|: :..|.|..|.|......:|..|..:..::|.
  Fly   517 QRLPDRDIVRHKVPLQACLERFFGPELIEQFYS-TAIGSKTNARKITRLATMPDCLMIHVGKFTL 580

  Fly  2215 NMVTMLKEKVNTHFSFPLRLNMCHYVE-------KTLMPQQYKEE-------------------- 2252
            . ...:.:|::.....|..|::.::..       :..:|:...||                    
  Fly   581 G-DDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPP 644

  Fly  2253 ----RERRQKEKEGADGS------------------------GD-------------------GN 2270
                |.....:..|.:.:                        ||                   |.
  Fly   645 EACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPESLAMLMSMGF 709

  Fly  2271 DNEKAEATL---DDDIEECYE----------------------------------------YELV 2292
            |..:|.|.|   |.::|...:                                        |.||
  Fly   710 DERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANSSAAAASSTPNKTNYRDGRGKYRLV 774

  Fly  2293 GVTVHTGT-ADGGHYYSFIKERTKTSYHTHERWFLFNDAEV 2332
            ....|.|| |..|||...|:::.:        |.:|||::|
  Fly   775 AFISHMGTSAQVGHYVCHIRKKGE--------WVIFNDSKV 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 84/496 (17%)
UCH 2014..2377 CDD:278850 83/495 (17%)
DUF3517 2723..>2877 CDD:288853
Usp5NP_001246589.1 UBP14 24..825 CDD:227532 84/496 (17%)
zf-UBP 204..278 CDD:280334
Peptidase_C19B 333..823 CDD:239123 82/493 (17%)
UBA1_UBP5_like 631..674 CDD:270480 2/42 (5%)
UBA2_UBP5 696..737 CDD:270569 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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