DRSC/TRiP Functional Genomics Resources

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Protein Alignment puf and Usp18

DIOPT Version :10

Sequence 1:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster
Sequence 2:NP_001014080.1 Gene:Usp18 / 312688 RGDID:1359153 Length:362 Species:Rattus norvegicus


Alignment Length:384 Identity:89/384 - (23%)
Similarity:138/384 - (35%) Gaps:80/384 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  2003 WPRDEGRAECGYVGLTNLGATCYMASCVQHLYMMPQARAAVLR--VPPNAARKHGPTLLELQRMF 2065
            |.|..     |:|||.|:|.||.:.|.:|...|....|..:.|  ||..|..:......:|..:.
  Rat    45 WDRPH-----GFVGLHNIGQTCCLNSLIQVFMMNVDFRMVLKRITVPRGAEEQKRSVPFQLLLLL 104

  Fly  2066 AYLLESERKSYNPRSFCRVYQMDHQPLNTGEQKDMAEFFIDLVSKLEDMTP--DLKHLVKRLFCG 2128
            ..:.:|.:|:..|....:..|..:.||..  |.|.|..|:.:.:..:|...  ||...::.||..
  Rat   105 EKMQDSRQKAVLPTELVQCLQKYNVPLFV--QHDAAHLFLTIWNLTKDQITDIDLAERLQDLFTI 167

  Fly  2129 SLSNNVVSLDCGHVSRTAEDFYTVRCQVADM-----RNLQESLDEVTVKDTLEGDNMYTCSQCGK 2188
            ....:::.:.||..|.......|:...:.||     :.|:::|........|...:...|..|||
  Rat   168 WTEESLMCVGCGAESSRRGKLLTLSLPLFDMDSKPLKTLEDALRCFFQPKELASSDKCFCETCGK 232

  Fly  2189 KVRAEKRACFKKLPQILCFNTMRYTFNMVTMLKEKVNTHFSFPLRLNMCHYVEKTLMPQQYKEER 2253
            |...::.......||.|..:.||::......:|              :||.|   ..||..    
  Rat   233 KTPCKQAQKLTGFPQTLTIHLMRFSVRNSQTVK--------------ICHSV---YFPQSL---- 276

  Fly  2254 ERRQKEKEGADGSGDGNDNEKAEATLDDDIEECYEYELVGVTVHTGTADGGHYYSFIKERTKTSY 2318
                             |..:...|.|   :....|||..|..|.|.||.|||.::|:.      
  Rat   277 -----------------DFSQILPTTD---QSEIHYELFAVIAHVGMADFGHYCAYIRN------ 315

  Fly  2319 HTHERWFLFNDAEVKPFDPSQIAAECFGGEMTSKTYDSVTEKYLDFSFEKTNSAYMLFY 2377
            .....||.|||:.|           |:      .|:..|...|.|..:....:||:|.|
  Rat   316 PVDGEWFCFNDSHV-----------CW------VTWKDVQCTYGDHIYRWRETAYLLVY 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 87/374 (23%)
DUF3517 2648..>2884 CDD:463438
MDN1 <3661..>3887 CDD:444083
Usp18NP_001014080.1 UCH 52..357 CDD:425685 85/370 (23%)
Blue background indicates that the domain is not in the aligned region.

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