DRSC/TRiP Functional Genomics Resources

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Protein Alignment puf and Usp47

DIOPT Version :10

Sequence 1:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster
Sequence 2:XP_006230106.1 Gene:Usp47 / 308896 RGDID:1310411 Length:1395 Species:Rattus norvegicus


Alignment Length:554 Identity:137/554 - (24%)
Similarity:223/554 - (40%) Gaps:122/554 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  2009 RAECGYVGLTNLGATCYMASCVQHLYMMPQARAAVLRVPPNAARKHGPTLL--ELQRMFAYLLES 2071
            ::|.|||||.|...|||:.|.:|.|:|.|:.|.|:.:.....:.:...|.:  :|||:|..|..|
  Rat   182 KSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLFVLLQTS 246

  Fly  2072 ERKSYNPRSFCRVYQMDHQPLNTGEQKDMAEFFIDLVSKLEDMTPDLKH--LVKRLFCGSLSNNV 2134
            ::::.......|.:..|..  ...:|.|:.|....:...||......:.  |:..|:.|.|.:.|
  Rat   247 KKRAIETTDVTRSFGWDSS--EAWQQHDVQELCRVMFDALEQKWKQTEQADLINELYQGKLKDYV 309

  Fly  2135 VSLDCGHVSRTAEDFYTVRCQVAD------MRNLQESLDEVTVKDTLEGDNMYTCSQCGKKVRAE 2193
            ..|:||:.....:.:..:...:..      ..:::|:|......:.|:|.|.|.|.:|.||..|.
  Rat   310 RCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDAR 374

  Fly  2194 KRACFKKLPQILCFNTMRYTFNMVTMLKEKVNTHFSFPLRLNMCHYVEKTLMPQQYKEERERRQK 2258
            |...|...|.:|.....|:.|:..||.:.|:|...|||..|:|..:::        .|:.:..|.
  Rat   375 KGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMSFPEELDMSTFID--------IEDEKSPQT 431

  Fly  2259 EK---EGADGSGD-GNDNEKAEATLDDDIEE--CYE----------------------------- 2288
            |.   .||:..|. .:|....:.:.||.::|  |.|                             
  Rat   432 ESCTDSGAENEGSCHSDQMSNDFSTDDAVDEGICLESSTGSEKISKPGLEKVEMAETDQRKDSIQ 496

  Fly  2289 ----------YELVGVTVHTGTADGGHYYSFIKERTKTSYHTHERWFLFNDAEVKPFDPSQIAAE 2343
                      |||..|.||:|:|.|||||:.||.      .:.::|:.|||..|.......| .:
  Rat   497 FQLGEPNSLMYELFSVMVHSGSAAGGHYYACIKS------FSDDQWYSFNDQHVSRITQEDI-KK 554

  Fly  2344 CFGGEMTSKTYDSVTEKYLDFSFEKTNSAYMLFYERR-------------LPEHLQRRHSELLVT 2395
            ..||...|:.|.|       .:|..:.:||||.|..:             .|||::.        
  Rat   555 THGGSSGSRGYYS-------SAFASSTNAYMLIYRLKDPTRNAKFLEVDEYPEHIKN-------- 604

  Fly  2396 PTPSPTVEEKSEAEEPTK----METSSSEIK-------ADVDVEVEVE-EKDKEKPAQTDTESKE 2448
                 .|:::.|.||..|    :|.::.:||       ..|.:|.::| .|||......:...|.
  Rat   605 -----LVQKERELEEQEKRQREIERNTCKIKLFCLHPVKQVMMENKLEVHKDKTLKEAVEMAYKM 664

  Fly  2449 TPAKEEIADD---KSKQDEPEEKKIEKQSREGEE 2479
            ...::.|..|   ..|.||..:  ..::|.||||
  Rat   665 MDLEDVIPLDCCRLVKYDEFHD--YLERSYEGEE 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 108/436 (25%)
DUF3517 2648..>2884 CDD:463438
MDN1 <3661..>3887 CDD:444083
Usp47XP_006230106.1 peptidase_C19C 186..586 CDD:239124 108/423 (26%)
USP47_C 1144..1383 CDD:466158
Blue background indicates that the domain is not in the aligned region.

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