DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puf and Usp35

DIOPT Version :9

Sequence 1:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster
Sequence 2:XP_006507886.1 Gene:Usp35 / 244144 MGIID:2685339 Length:1072 Species:Mus musculus


Alignment Length:1189 Identity:228/1189 - (19%)
Similarity:368/1189 - (30%) Gaps:457/1189 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1571 ENQPKQHSKRQKKGETFEQEKERPVGCSTPPSPTPPPPAL---SVVERGDNKWSEAFVKCGGLRH 1632
            |:.|.| :::.:...:...:...| ||.. .||.|.|.|.   .::|........|.||.|.:|.
Mouse    26 ESDPSQ-ARKLRPFYSISTQGSGP-GCGW-RSPCPQPRAAVMDKILEAVVTSSYPASVKQGLVRR 87

  Fly  1633 LYEIFSEGQLQQSAHPKELALNEWRHDCLASLLRI---LWLLGFEELQSADAHVLMSRPHPFMLQ 1694
            :        |:.:..|.|      |..||| ||.:   |::.|.|||           |.....|
Mouse    88 V--------LEAARQPLE------REQCLA-LLALGARLYVGGTEEL-----------PRRVGCQ 126

  Fly  1695 LMEVPQCLTRLSSILNDEVHQQHQASSANPLVFPYQFQHLR--------TGFWGRAQL--IQFAM 1749
            |:                    |.|...:|.||...|...|        .|..|...|  :|..:
Mouse   127 LL--------------------HVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGARALACVQLGL 171

  Fly  1750 NILVS-------FVHASAEARRLLWAPTGTDHCRWLQKFILED----PEPAVRREICAGLYRICL 1803
            .:|..       |.....|..|.:....|...|..:.:.:...    |:.|.|...|..|.| ||
Mouse   172 QLLPDGPAADEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGAHRLLFCQQLVR-CL 235

  Fly  1804 G-----------------NAHSYRLLLA-----------PLLHKLIALLPLAEQ------MSSGN 1834
            |                 .|.....|||           |.|.:|.|::...|:      ::|..
Mouse   236 GRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCTEEEPPSSALASVV 300

  Fly  1835 QHTQFLLSE------EGKDPYGPACRDYFWLLARLVDTLSPEM-----------------VAEEH 1876
            ||....|.:      ...|....:  .....::|::|.:|..:                 |.:..
Mouse   301 QHLPLELMDGVVRNLSNDDSVTDS--QMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFS 363

  Fly  1877 IDIEMLCESISQ---------------SILTREYYELRHGYQDDGLV--GLLNLMSNLIKYDTTF 1924
            |.||:....|.:               |:|.......:|.::...|:  .:..::::|:|.|:. 
Mouse   364 ILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASLVKEDSN- 427

  Fly  1925 KYTPKALSFIEQLIG----FLFDMPSPADRQKPKCKSASSRASAYDLLVELCRGCATNYAYLH-- 1983
                ...|.:|||..    .:|..|...|..:|..::...                     ||  
Mouse   428 ----SGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKD---------------------LHIP 467

  Fly  1984 -----GRLLAQHKSGPKQPYPWDYWPRDEGRAECGYVGLTNLGATCYMASCVQHLYMMPQARAAV 2043
                 .:||.|.....::.....::||...:::.|.:||.|||.|||:.|.:|.|:|....|..|
Mouse   468 NEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSVLQALFMASDFRHCV 532

  Fly  2044 LRVPPNAARKHGPTLLELQRMFAYLLESERKSYNPRSFCRVYQMDHQP-LNTGEQKDMAEFFIDL 2107
            ||:..|.::   |.:.:||.:||:|..|:|.:.:|.:|   ......| .:.|.|:|.:|:...|
Mouse   533 LRLTENNSQ---PLMTKLQWLFAFLEHSQRPAISPENF---LSASWTPWFSPGTQQDCSEYLKYL 591

  Fly  2108 VSKL-----------------------EDMTPDLKHLVKRLFCGSLSNNVVSLDCGHVSRTAEDF 2149
            :.:|                       |::.......|:::|.|.:...:..|.|.:||...|.|
Mouse   592 LDRLHEEEKTGMRICQKLKQSSLPSPQEELPSSNATSVEKMFGGKIVTRICCLHCLNVSSREEAF 656

  Fly  2150 YTV--------------------------------------------RC---------------- 2154
            ..:                                            ||                
Mouse   657 TDLSLAFPPPERSRHRRLGSVMLPTEDVRVQELTLAPRAPGAQRQRKRCITGDAPRTGLDSEGVD 721

  Fly  2155 ----------------------QVADMR----NLQESLDEVTVKD------------------TL 2175
                                  :||:.|    ..:|..:|...||                  ..
Mouse   722 TIGTGGRSGQEKVEREQAGKEKEVAEDREEEGTREEEKEEGEEKDKEKEKKEDEKEKEAENGKEK 786

  Fly  2176 EGD-------------------------------------------NMYTCSQCGKKVRAEKRAC 2197
            |||                                           |.|.|..|.....|||...
Mouse   787 EGDSLGPGTHREAATPPREQTCGPEGSRSVLDLVNYFLSPERLTAENRYYCESCASLQDAEKVVE 851

  Fly  2198 FKKLPQILCFNTMRYTFNMVTMLKEKVNTHFSFPLRLNMCHYVEKTLMPQQYKEERERRQKEKEG 2262
            ..:.|:.|....:|::|::.||.:.|:....:.||.|.         :|.               
Mouse   852 LSQGPRYLILTLLRFSFDLRTMRRRKILDDVTIPLLLR---------LPL--------------- 892

  Fly  2263 ADGSGDGNDNEKAEATLDDDIEECYEYELVGVTVHTG-TADGGHYYSFIKE---RTKTSYHTHER 2323
            |.|.|..                   |:|..|.||:| :::.||||.:.:|   |......:.||
Mouse   893 AGGQGQA-------------------YDLCSVVVHSGVSSESGHYYCYAREGAARPAPVLGSTER 938

  Fly  2324 ------WFLFNDAEVKPFDPSQIAAECFGGEMTSKTYDSVTEKYLDFSFEKTNSAYMLFYERRLP 2382
                  |:||||..|                 :..:::||:..   .||...::||:|||.:|  
Mouse   939 PEPENQWYLFNDTRV-----------------SYSSFESVSNV---TSFFPKDTAYVLFYRQR-- 981

  Fly  2383 EHLQRRHSELLVTPTPSPTVEEKSE--AEEPTKMETSSSEIKADVDVEVEVEEKDKEKPAQTDTE 2445
                         |...|..|..|.  ..|||..:.....|..|..:.::.:||:....|...:.
Mouse   982 -------------PREDPAAEPGSPRVRAEPTLHKDLMEAISKDNVLYLQEQEKEARSRAAYIST 1033

  Fly  2446 SKETPAKEEIADDKSKQDE 2464
            ....|......|:...:||
Mouse  1034 LPAPPHWGRGFDEDKDEDE 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 108/549 (20%)
UCH 2014..2377 CDD:278850 104/543 (19%)
DUF3517 2723..>2877 CDD:288853
Usp35XP_006507886.1 Peptidase_C19 505..979 CDD:351799 105/542 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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