DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atl and Gbp11

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001034736.3 Gene:Gbp11 / 634650 MGIID:3646307 Length:619 Species:Mus musculus


Alignment Length:419 Identity:95/419 - (22%)
Similarity:167/419 - (39%) Gaps:73/419 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EEHT--FVLNEDALSEVLMRDEVKDRF---VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT 72
            |.|.  .::|::|:       |:.|:.   |.||::.|.:|.|||:|:                 
Mouse    13 ENHNEQLLVNQEAI-------EILDKISQPVVVVAIVGLYRTGKSYLM----------------- 53

  Fly    73 DWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCA 136
            :.|.|::   .||......:..|.||.||    ...:|...:..::||||:|..| .:...::..
Mouse    54 NRLAGQN---HGFPLGSTVQSQTKGIWMW----CVPHPTKPEHTLVLLDTEGLGDVEKGDPKNDL 111

  Fly   137 TVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKP------------FQRLQF 189
            .:||||.:|||..|||....|..|.|:.|...||...|..|.:...|            |....:
Mouse   112 WIFALSVLLSSNFIYNSMNTISHDSLEKLHYVTELTELIRAKSSPNPHGIKNSTEFVSFFPDFVW 176

  Fly   190 LVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQS---LRRHISSCFTEVACFLMPHPGLNV 251
            .|||::...:.....:..|..|:..|::....:|.:|:   .|..|...|....||:...|..::
Mouse   177 TVRDFTLKLKLNGEDITSDGYLENALKLIPDNNPRMQASNLARECIRRFFPNRKCFVFDRPTYDI 241

  Fly   252 ATNPKFDGRLQD-ITPEFKSSLRSLVPMLLAPDNLVYKEI----SGQRVRARDLIQYFQSYMNIY 311
            ....|.:...:| :.|.|:...::.|..:..     |.:|    .|.:|....|.....:|::..
Mouse   242 ELLQKLETISEDQLDPMFQKRTKAFVSYIFN-----YAKIKTLKEGIKVTGNGLGILVTTYVDAI 301

  Fly   312 KGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQ---TEHLRVKDKA 373
            ....:|.....:...|:..:..||..|.:.|.:.|.:     |..|.|..||   ..|...:.:|
Mouse   302 NSGAVPCLHDAVTTLAQRENSVAVQKAADHYSEQMAQ-----RLRLPTETLQELLDVHAACEKEA 361

  Fly   374 LFQFAAKRKMGGEEFTEKFRKQLEDDLEE 402
            :..|   .:...::..::|.|:|.:.:.|
Mouse   362 MAVF---MEHSFKDENQQFLKKLVELISE 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 70/296 (24%)
MSC <316..>471 CDD:286487 19/90 (21%)
Gbp11NP_001034736.3 GBP 16..279 CDD:280433 70/298 (23%)
GBP_C 281..575 CDD:202427 23/115 (20%)
GBP_C 287..575 CDD:293879 21/109 (19%)
coiled coil 544..555 CDD:293879
coiled coil 564..575 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832129
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.