DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atl and Gbp3

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_006501782.1 Gene:Gbp3 / 55932 MGIID:1926263 Length:680 Species:Mus musculus


Alignment Length:465 Identity:101/465 - (21%)
Similarity:174/465 - (37%) Gaps:104/465 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GGSAVQVINASE---EHTFVLNED-------ALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLD 56
            ||.:|....|||   |....|.|:       .|..:.:.:::....| ||::.|.:|.|||:|: 
Mouse    47 GGPSVHGSAASEWTMEAPICLVENWKNQLTVNLEAIRILEQIAQPLV-VVAIVGLYRTGKSYLM- 109

  Fly    57 FFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLD 121
                            :.|.|.:   .|||.....:.:|.||.||    ...:|......::|||
Mouse   110 ----------------NRLAGRN---HGFSLGSTVQSETKGIWMW----CVPHPTKPTHTLVLLD 151

  Fly   122 TQGAFD-SQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKP-- 183
            |:|..| .:...::.:.:|||:.:|||..:||....|.:..|:.|...||..:|..|.:..:.  
Mouse   152 TEGLGDVEKGDPKNDSWIFALAVLLSSTFVYNSMSTINQQALEQLHFVTELTQLIRAKSSPREDK 216

  Fly   184 ----------FQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQS---LRRHISSC 235
                      |....:.|||::...:.....:..|:.|:..|::....:.::|.   .|..|...
Mouse   217 VKDSSEFVGFFPDFIWAVRDFALELKLNGRPITEDEYLENALKLIQGDNLKVQQSNMTRECIRYF 281

  Fly   236 FTEVACFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEI---------- 290
            |....||:...|                     .|..|.|:.:...|:|.:.:..          
Mouse   282 FPVRKCFVFDRP---------------------TSDKRLLLQIENVPENQLERNFQVESEKFCSY 325

  Fly   291 -----------SGQRVRARDLIQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQ 344
                       .|..|....|....|:|:|......:|..::.:...|:..:..||..|.:.|.:
Mouse   326 IFTNGKTKTLRGGVIVTGNRLGTLVQTYVNAINSGTVPCLENAVTTLAQRENSIAVQKAADHYSE 390

  Fly   345 LMEEVCGGTRPYLSTAHLQ---TEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTN 406
            .|.:     |..|.|..||   |.|...:.:|:..|........|   ::|:|:|...:||....
Mouse   391 QMAQ-----RMRLPTDTLQELLTVHAACEKEAIAVFMEHSFKDDE---QEFQKKLVVTIEERKEE 447

  Fly   407 YQAHNESKNI 416
            :...||:.:|
Mouse   448 FIRQNEAASI 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 64/297 (22%)
MSC <316..>471 CDD:286487 25/104 (24%)
Gbp3XP_006501782.1 GBP 72..335 CDD:308078 61/308 (20%)
GBP_C 337..633 CDD:308475 31/129 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832117
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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