DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and gbp4

DIOPT Version :10

Sequence 1:NP_651274.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001038355.1 Gene:gbp4 / 559296 ZFINID:ZDB-GENE-060531-46 Length:618 Species:Danio rerio


Alignment Length:430 Identity:98/430 - (22%)
Similarity:171/430 - (39%) Gaps:86/430 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWS 102
            |.||:|.|.:|.|||||:                 :.|.|:.   .||:.....:..|.||.|| 
Zfish    33 VVVVAVVGPYRTGKSFLM-----------------NRLAGKR---TGFALSSNIKPKTEGIWMW- 76

  Fly   103 DIFLHDYPNGDKIAIILLDTQGAFDSQ--STVRDCATVFALSTMLSSVQIYN---LSQNIQEDDL 162
               ...:|......::||||:|..|.:  .:.|| ..:|:|:.:|||..:||   ...|:..:.|
Zfish    77 ---CVPHPTKAGTTLVLLDTEGLGDVEKGDSKRD-TYIFSLTVLLSSTLVYNSWGTIDNLAIEQL 137

  Fly   163 QHLQLFTEYGRLALADTG------KKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEV---S 218
            |::....|:.::...:..      .|.|....:.:||::...:.:...|..|:.|:..|::   :
Zfish   138 QYVTELIEHIKVTPDEDADDCAEFAKFFPHFIWCLRDFTLELKLDGKDLTEDEYLEFALKLRPGT 202

  Fly   219 DKQHPELQSLRRHISSCFTEVACFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAP- 282
            .|:.......|..|...|....||..|.|                .|||.:|.|.||.|...:| 
Zfish   203 SKKVMMYNLPRECIRKFFPCRTCFTFPSP----------------TTPEKRSILESLSPAEFSPE 251

  Fly   283 -------------DNLVYKEI-SGQRVRARDLIQYFQSYMNIYKGNELPEPKSMLVATAEANHLT 333
                         |....|:: .|..|..|.|....:.|::......:...::.::|.|:..:..
Zfish   252 FLEVTKRFCKFVFDRSEVKQLKGGHTVTGRVLGNLTKMYVDTISSGAVFCLENAVIAMAQIENEA 316

  Fly   334 AVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLED 398
            |.....|:|.:.||:: ..:.| |....:.:||.|:...|...|.|:   ..::...|..|.||.
Zfish   317 ATQEGLEVYQRGMEKL-KSSFP-LELEQVSSEHQRLSRMATQAFMAR---SFKDTDGKHLKALEG 376

  Fly   399 DLEEVFTNYQAHNESKN--------IFKAARTPA---VYF 427
            ::.::|..|::.|:...        ::...:.|.   |||
Zfish   377 EIGKLFDAYRSQNKQVGLETHCDLLLYMRCKDPLILHVYF 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_651274.1 GBP 14..289 CDD:460516 66/278 (24%)
gbp4NP_001038355.1 GBP 40..272 CDD:460516 63/272 (23%)
GBP_C 280..>402 CDD:293879 25/126 (20%)
CARD_ASC_NALP1 532..614 CDD:260039
Blue background indicates that the domain is not in the aligned region.

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