DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and gbp1

DIOPT Version :10

Sequence 1:NP_651274.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001016773.1 Gene:gbp1 / 549527 XenbaseID:XB-GENE-6045650 Length:595 Species:Xenopus tropicalis


Alignment Length:459 Identity:108/459 - (23%)
Similarity:183/459 - (39%) Gaps:85/459 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT 72
            :|.....:.||:|.:| .::|  .::.|. |.||::.|.:|.|||:|:                 
 Frog    13 LIENRNSNEFVINTEA-EQIL--SQITDP-VVVVAIVGKYRTGKSYLM----------------- 56

  Fly    73 DWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCA 136
            :.|.|..   .||......:..|.||.||    ...:|......::||||:|..| .:...::..
 Frog    57 NKLAGRK---TGFPLGSTIQSKTKGIWMW----CVPHPCQPSHTLVLLDTEGLGDVEKGDSKNDG 114

  Fly   137 TVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLAL------------ADTGKKPFQRLQF 189
            .:|:|:.:|||..:||....|....::.||..||..:|..            .|..|:.|....:
 Frog   115 WIFSLAVLLSSNLVYNSMGTIDNHAMEQLQYVTELSKLIKLKSNPEQEEKNEPDEFKRIFPSFTW 179

  Fly   190 LVRDWSFPYEAEYGALGGDKILKRRLEV---SDKQHPELQSLRRHISSCFTEVACFLMPHPGLNV 251
            .|||:|...|.:...:..|:.|...|::   :|||..:....|..|...|....||:...|    
 Frog   180 CVRDFSLILELDGKKVTEDEYLMNSLKLKKGTDKQTQDYNLPRECILHYFHSHKCFVFDQP---- 240

  Fly   252 ATNPKFDGRL-----QDITPEFKSSLRSLVPMLLAPDNL----VYKEISGQRVRARDLIQYFQS- 306
             |:.:...||     ||:..:|....|...      |::    |.|.:.|..:....::.:..| 
 Frog   241 -TSSRNLHRLEELQEQDLEEDFVKQTRKFC------DHIHTQGVAKTLPGGLIVTGRMLAHLTSL 298

  Fly   307 YMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQT---EHLR 368
            |:.......:|..::.::|.:...:..||..|...|...|:|    ..|...|..||.   .|.|
 Frog   299 YIETIMSGSVPCMENAVLALSVMENTGAVQDALAKYETCMKE----HLPRFPTETLQEFLHLHQR 359

  Fly   369 VKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAARTPAVYFACAVIM 433
            .:.:||..| .||....|  .:.|:|:.::.|:....|:...||.::..:          |.:|:
 Frog   360 SEKEALEVF-LKRSFNDE--NQDFQKEFKNLLDNKMKNFSERNERESTER----------CEIII 411

  Fly   434 YILS 437
            ..||
 Frog   412 QELS 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_651274.1 GBP 14..289 CDD:460516 73/299 (24%)
gbp1NP_001016773.1 GBP 20..281 CDD:460516 74/299 (25%)
GBP_C 283..579 CDD:460721 33/150 (22%)

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