DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and Gbp5

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001102039.2 Gene:Gbp5 / 362050 RGDID:1311040 Length:586 Species:Rattus norvegicus


Alignment Length:415 Identity:98/415 - (23%)
Similarity:167/415 - (40%) Gaps:70/415 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT 72
            :|..::|| .|.|::|| |:|   ....:.|.||::.|.:|.|||:|:                 
  Rat    13 LIANTDEH-LVTNQEAL-EIL---SAITQPVVVVAIVGLYRTGKSYLM----------------- 55

  Fly    73 DWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFDSQST-VRDCA 136
            :.|.|:.   :|||.....:..|.||.||    ...:|......::||||:|..|.:.. .::..
  Rat    56 NKLAGKE---KGFSVGSTVQSHTKGIWMW----CVPHPQKPDHTLVLLDTEGLGDVEKVDEKNDI 113

  Fly   137 TVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKP-----------FQRLQFL 190
            .:|||:.:|||..:||....|.:..:..|...||...|........|           |..|.:.
  Rat   114 QIFALAILLSSTFVYNTMSKIDQGAIDLLHSVTELTDLLRTRNTSDPSETKEPDDMSFFPDLVWT 178

  Fly   191 VRDWSFPYEAEYGALGGDKILKRRL---EVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLNVA 252
            :||:....|....|:..|:.|::.|   :.||::.......|..|...|....||:...|.|...
  Rat   179 LRDFFLGLEVNGQAITSDEYLEKSLMLKQGSDERTQTFNLPRLCIQKFFPVKKCFVFDSPALGSK 243

  Fly   253 TNPKFDGRLQDITPEFKSSLRSLVPMLLA-------PDNLVYKEISGQRVRARDLIQYFQSYMNI 310
            .:........::.|:|..:|......:..       |..:   :::|.|:.:     ..|:|::.
  Rat   244 LSQLQTLNSDELNPDFVQNLSEFCSHIFTHSKTKTLPGGI---QVNGPRLES-----MVQTYVDA 300

  Fly   311 YKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQ---TEHLRVKDK 372
            .....||..::|:|......:..||..|...|.|.|.:     :..|.|..||   ..|...:.:
  Rat   301 INSGALPSMENMVVTLTRRENTAAVQKAIAHYDQQMSQ-----KVQLPTETLQLLLDLHKTCEKE 360

  Fly   373 ALFQFAAKRKMGGEEFTEKFRKQLE 397
            |:..|   ||...::..:.|:|:||
  Rat   361 AIEIF---RKRSFKDDDQCFQKELE 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 70/296 (24%)
MSC <316..>471 CDD:286487 23/85 (27%)
Gbp5NP_001102039.2 GBP 18..279 CDD:280433 69/289 (24%)
GBP_C 281..559 CDD:202427 27/118 (23%)
GBP_C 287..529 CDD:293879 27/109 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335790
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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