DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and Gbp4

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001292190.1 Gene:Gbp4 / 310917 RGDID:1310579 Length:620 Species:Rattus norvegicus


Alignment Length:438 Identity:102/438 - (23%)
Similarity:176/438 - (40%) Gaps:77/438 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT 72
            |.|..|:.|..|....:.|.:.:..|      ||::.|.:|.|||:|:                 
  Rat     8 VQNWKEQLTVNLEAIGILEQIAQPLV------VVAIVGLYRTGKSYLM----------------- 49

  Fly    73 DWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCA 136
            :.|.|.:   .|||.....:.:|.||.||    ...:|......::||||:|..| .:...::.:
  Rat    50 NRLAGRN---HGFSLGSTVQSETKGIWMW----CVPHPTKPTHTLVLLDTEGLGDVEKGDPKNDS 107

  Fly   137 TVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKP------------FQRLQF 189
            .:|||:.:|||..:||....|....|:.|...||..:|..|.:..:.            |....:
  Rat   108 WIFALAVLLSSTFVYNSMSTINHQALEQLHYVTELTQLIRAKSDPREDKVEDSSEFVGFFPDFIW 172

  Fly   190 LVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQS---LRRHISSCFTEVACFLMPHPGLNV 251
            .|||:....:.:...:..|:.|:..|::..:.:|:.|.   .|..|...|....||:...|    
  Rat   173 AVRDFVLELKLDGRPITEDEYLENALKLIPENNPKGQKSNMTRECIRYFFPVRKCFVFDRP---- 233

  Fly   252 ATNPK---FDGRLQDITPE------FKSSLRSLVPMLLAPDNLVYKEI-SGQRVRARDLIQYFQS 306
             ||.|   |  ::::: ||      |:....:....:.|  |...|.: .|..|....|....|:
  Rat   234 -TNDKSLLF--QIENV-PENQLEWNFQVESENFCSYIFA--NGKTKTLRGGVIVTGNRLGTLVQT 292

  Fly   307 YMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQ---TEHLR 368
            |::......:|..::.:.|.|:..:..||..|.|.|.:.|.:     |..|.|..||   ..|..
  Rat   293 YVDAINSGTVPCLENAVTALAQRENSAAVQKAAEHYAEQMAQ-----RLRLPTDTLQELLEVHSA 352

  Fly   369 VKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNI 416
            .:.:|:..|........|   ::|:|:|...:|:....:...||:.:|
  Rat   353 CEKEAIAVFMEHSFKDDE---QEFQKRLVATIEKWKEEFMLRNEAASI 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 68/299 (23%)
MSC <316..>471 CDD:286487 25/104 (24%)
Gbp4NP_001292190.1 GBP 12..275 CDD:280433 70/302 (23%)
GBP_C 277..573 CDD:202427 30/129 (23%)
GBP_C 283..573 CDD:293879 28/123 (23%)
coiled coil 542..553 CDD:293879
coiled coil 562..573 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335787
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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