DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atl and Atl3

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_006230874.1 Gene:Atl3 / 309187 RGDID:1309871 Length:541 Species:Rattus norvegicus


Alignment Length:529 Identity:276/529 - (52%)
Similarity:374/529 - (70%) Gaps:20/529 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VQVINA-SEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHH 69
            |||:.. .|:|:|.|.|.||:.||::|.::|..|.||||||||||||||:|||.|||:||: ..|
  Rat    27 VQVVLVHKEQHSFELEERALASVLLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQ-KEH 90

  Fly    70 DATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRD 134
            ..::|||...:||.||||||||:.:||||.:||::|....|.|.::|::|:||||||||||||:|
  Rat    91 GHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKEVAVVLMDTQGAFDSQSTVKD 155

  Fly   135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYE 199
            |||:||||||.||||||||||||||||||.|||||||||||:.:..:||||.|.|||||||||||
  Rat   156 CATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYE 220

  Fly   200 AEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLNVATNPKFDGRLQDI 264
            ..||..||...|.:||:|.:.||.|:|::|.||.|||::|.|||:|||||.|||:|.|||:|:||
  Rat   221 YNYGLQGGMSFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDI 285

  Fly   265 TPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQYFQSYMNIYKGNELPEPKSMLVATAEA 329
            ..|||..|::|:|.:|.|..|:.|||:|.:|..|.|::||::|:.||:|.:||.|||||.|||||
  Rat   286 ASEFKEQLQTLIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEA 350

  Fly   330 NHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRK 394
            |:|.|.|:||::|...|||:|||.:||||...|:.:|...|..||..|...:||||::|:.::::
  Rat   351 NNLAAAASAKDIYYSSMEEICGGEKPYLSPDILEEKHQEFKQLALDHFKKTKKMGGKDFSFRYQQ 415

  Fly   395 QLEDDLEEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVA 459
            :||:::.|::.|:..||.|||:|...|||||.|....::||.||:.|.:||...|...|.::|:.
  Rat   416 ELEEEITELYENFCKHNGSKNVFSTFRTPAVLFTGIAVLYIASGLTGFIGLEVVAQLFNCMVGLL 480

  Fly   460 LLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAV-----G 519
            |:.|..|.||||||:..:.||.:|..|..:            :|:...|:. ::|:.||     |
  Rat   481 LIALLTWGYIRYSGQYLELGGAIDSGAAYV------------LEQASSHIG-NSTQAAVRDAIAG 532

  Fly   520 GGAASYRSQ 528
            ...|..:||
  Rat   533 RPPADKKSQ 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 171/274 (62%)
MSC <316..>471 CDD:286487 71/154 (46%)
Atl3XP_006230874.1 P-loop_NTPase 37..305 CDD:304359 170/268 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 385 1.000 Domainoid score I772
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 627 1.000 Inparanoid score I818
OMA 1 1.010 - - QHG58971
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0001595
OrthoInspector 1 1.000 - - otm46289
orthoMCL 1 0.900 - - OOG6_102856
Panther 1 1.100 - - LDO PTHR10751
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1147
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.940

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