DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and LOC100496673

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_012814863.1 Gene:LOC100496673 / 100496673 -ID:- Length:601 Species:Xenopus tropicalis


Alignment Length:488 Identity:115/488 - (23%)
Similarity:221/488 - (45%) Gaps:77/488 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHH 69
            ||.:|.|.......||..|:....:||.::|..|.::||.|..|.|||||:::.:|.:.::...:
 Frog   160 AVPLIFADHAGNIKLNMAAVENYFLRDNMRDIPVYLLSVVGEKRTGKSFLMNYIIRALRNQVKGN 224

  Fly    70 DATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRD 134
            ..:  ||.|::.|.||.|:.|:...|.|:.:||..|..: .||.|:|:.::|::|..|..:....
 Frog   225 IFS--LGEENETLTGFEWKPGTLGTTKGVWIWSKPFFLE-RNGKKMALFVMDSEGLMDIGNDRNT 286

  Fly   135 CATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYE 199
            ...:|....:||:..|:|:...:.|.::.:|:::. :..:..|:..|   |.|..:||||: .:|
 Frog   287 STKLFLSCVLLSTHLIFNVKGVLDEREVDYLEIYM-HQAVQRAEQNK---QYLDIVVRDWN-DHE 346

  Fly   200 A---EYGALGGDKILKRRLEVSDKQHPELQSLR-RHISSCFTE------VACFLMPHPGLNVATN 254
            |   ::.|    ..||:::|:          || |.||....:      ..||||||||..::.:
 Frog   347 ACDSKHAA----SYLKQQVEI----------LRNRDISPAVLKALESDNTKCFLMPHPGKKISKS 397

  Fly   255 PKFDGRLQDITPEFKSSLRSLVPMLL-APDNLVYKEISGQRVRARDLIQYFQSYMNIYKGNELPE 318
            .  .|.::|:..:||.||...:..|: .|.|   ..::|..:  .:::....|::...:| :...
 Frog   398 K--TGVVKDMDEDFKESLTMYLKNLVERPKN---PTLTGALL--ANMLMEIISHLQHARG-DFAS 454

  Fly   319 PKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHL---QTEHLRVKDKALFQ---- 376
            |::|      ::.||.....:.:..:..:.:     |.||:..|   ..|.:..|...|.:    
 Frog   455 PQAM------SDQLTNSEEMQNIIVEFQKFL-----PTLSSLQLPGTMWECISAKSSELVKKFEV 508

  Fly   377 -FAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIF 440
             |:...........|:.|.:|::..|:.:::|             :...:.:|.:.:: ::||..
 Frog   509 SFSGTNADMRTNMVEELRSKLKEVGEKFYSDY-------------KWKGIKYASSALL-LVSGPL 559

  Fly   441 GLVGLYTFANFCNLVMGVALLTLALWAYIRYSG 473
            |  |:...............|..|| :|.:|.|
 Frog   560 G--GMMFAGEAAAAATTTGFLPTAL-SYAQYFG 589

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 80/285 (28%)
MSC <316..>471 CDD:286487 26/162 (16%)