DRSC/TRiP Functional Genomics Resources

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Protein Alignment atl and gbp6

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001120628.1 Gene:gbp6 / 100145795 XenbaseID:XB-GENE-6050518 Length:628 Species:Xenopus tropicalis


Alignment Length:449 Identity:102/449 - (22%)
Similarity:187/449 - (41%) Gaps:70/449 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDW 74
            |..|.:..|:|:.|:.  ::.|..:.  |..|::.|.:|.|||:|:                 :.
 Frog    18 NTPEGYKLVINQKAVQ--ILEDITEP--VVPVAIVGKYRTGKSYLM-----------------NK 61

  Fly    75 LGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVR-DCATV 138
            |.|.:|   ||:.....:..|.||.||    ...:|:.....::||||:|..|.:...| :.:.|
 Frog    62 LAGSND---GFALGSTIQSKTKGIWMW----CVPHPHKPGHTLVLLDTEGLGDVEKGDRKNDSWV 119

  Fly   139 FALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEY-GRLAL-ADTG---------KKPFQRLQFLVR 192
            |:|:.:|||..:||....|.::.|:.|...||. .|:.| |.|.         |:.|....:.||
 Frog   120 FSLAVLLSSTLVYNSVGTIDQESLEKLHYVTELTERIKLKAKTSNDDDESAEFKRTFPSFIWCVR 184

  Fly   193 DWSFPYEAEYGALGGDKILKRRLEVS---DKQHPELQSLRRHISSCFTEVACFLMPHPGLNVATN 254
            |::...|.|...:..|:.|:..|.:.   .|...|....|..|:..|....||:...|    |:.
 Frog   185 DFTLKLEQEGKQITEDEYLQMALNLKPGFSKAAREYNFPRECITHFFHSHKCFVFERP----AST 245

  Fly   255 PKFDGRLQDIT-----PEFKSSLRSLVPMLLAPDNLVYKEISGQR-VRARDLIQYFQSYMNIYKG 313
            .... ||::::     |.|..........:.  :|...|.::|.. |..|.|.....:|:...:.
 Frog   246 EDLQ-RLEELSESQLEPRFVKQAHRFCDFVF--NNSQTKTLAGGHCVTGRMLGTLAVTYVESIRS 307

  Fly   314 NELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFA 378
            ..:|..::.::|.|:..:..|:..|..:|...|:: ..||.|..:.....::..:.:.||:..|.
 Frog   308 GSVPCMENAVLALAQIENTAAIQKALSVYEAEMKQ-AEGTFPTETQDEFLSKQTQCEKKAVKVFM 371

  Fly   379 AKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILS 437
            .:   ..::...:::.:|..||::....:...||..:|.|          |..::.:||
 Frog   372 DR---SFKDDKREYQGKLMGDLQQKHQEFAKRNEEASIHK----------CQDLLQVLS 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 71/294 (24%)
MSC <316..>471 CDD:286487 23/122 (19%)
gbp6NP_001120628.1 P-loop_NTPase 25..283 CDD:422963 72/292 (25%)
GBP_C 291..582 CDD:293879 26/141 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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