DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atl and gbp5

DIOPT Version :9

Sequence 1:NP_001287506.1 Gene:atl / 42934 FlyBaseID:FBgn0039213 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001120244.2 Gene:gbp5 / 100145295 XenbaseID:XB-GENE-5756296 Length:636 Species:Xenopus tropicalis


Alignment Length:503 Identity:112/503 - (22%)
Similarity:191/503 - (37%) Gaps:122/503 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT 72
            :|...|....::|::||..:|...:.    |.||::.|.:|.|||:|:                 
 Frog    12 LIGNKEGEDLIVNQEALQILLKITQP----VVVVAIVGKYRTGKSYLM----------------- 55

  Fly    73 DWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFD-SQSTVRDCA 136
            :.|.|..:   ||:.....:..|.||.||    ...:|......::||||:|..| .:...::.|
 Frog    56 NKLAGARN---GFALGSTVQSKTKGIWMW----CVPHPTKQGNTLVLLDTEGLGDVEKGDSKNDA 113

  Fly   137 TVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALA-------------DTG--KKPFQR 186
            .:|:|:.:|||..:||....|.:..:.:|...||...|...             ::|  |:.|..
 Frog   114 WIFSLAILLSSTLVYNSMGTIDQQAMDNLHYVTELTELIKVKSDEAQATEEEDDESGEFKRFFPS 178

  Fly   187 LQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSL---RRHISSCFTEVACFLMPHPG 248
            ..:.|||::...|.....:..|:.|...||:......::|..   |:.|...|....||:...|.
 Frog   179 FIWCVRDFTLKLEKNGSPITEDQYLLDALELKKGVGKKVQDYNLPRQCIRHYFHSHKCFVFDRPA 243

  Fly   249 LNVA-------TNPKFDGRLQDITPEF------KSSLRSLVPMLLAPDNLVYKEISGQRVRARDL 300
            ..:|       ...:.:.:..:...||      ||:.::||              .|..|..|.|
 Frog   244 STLALQRLEELQESELESKFVEKAAEFCSCIYGKSNAKTLV--------------GGYTVTGRLL 294

  Fly   301 IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCG----GTRPYLSTAH 361
            .....||....:...:|..::.::|.|:..:..||..|...|.:.|.:...    .|:....:.|
 Frog   295 GNLAVSYTEAIRSGSIPCMENAVIALAQIENSRAVQEALTKYEEEMSKQIAKFPTETQEEFLSIH 359

  Fly   362 LQTEH--------LRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFK 418
            .:.|.        |..||:.|                :::|||.|:|.|..:.|..:||.::..|
 Frog   360 QECEKEATQVFMGLSFKDENL----------------EYQKQLIDELAEKKSKYSLYNEEESAKK 408

  Fly   419 AARTPAVYFACAVIMY---------ILSGIFGLVGLYT-FANFCNLVM 456
                      |..|:.         ||:|.|...|.|| |.:..||::
 Frog   409 ----------CKAILQKLSENLEREILNGKFSKPGGYTQFISEKNLLV 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atlNP_001287506.1 GBP 14..289 CDD:280433 67/306 (22%)
MSC <316..>471 CDD:286487 37/163 (23%)
gbp5NP_001120244.2 P-loop_NTPase 19..283 CDD:304359 65/291 (22%)
GBP_C 285..582 CDD:202427 43/188 (23%)
GBP_C 291..582 CDD:293879 41/182 (23%)
coiled coil 551..562 CDD:293879
coiled coil 571..582 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.