DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syx18 and Stx18

DIOPT Version :9

Sequence 1:NP_524485.1 Gene:Syx18 / 42933 FlyBaseID:FBgn0039212 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_081235.2 Gene:Stx18 / 71116 MGIID:1918366 Length:334 Species:Mus musculus


Alignment Length:400 Identity:130/400 - (32%)
Similarity:196/400 - (49%) Gaps:77/400 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDITQSFKASVMTVRLQRKA---ELAGKAKPATVPTKTGPIGPKDDFAKQAKEVCNKITSLRNVL 62
            :|||..|:|||.||:.:.||   .:.|.|..:..........||.||:.:|:||.:.|..||:.|
Mouse     3 VDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFL 67

  Fly    63 IENRTAYMRIGQH-LKSAAHMTDAQRDLIDRESEKFVTFYTQHLAKMRSDWKSAKRKPQERQHID 126
            :|:|..|:....| :.....|||.:||.||::::.|:...::.:.::|::........|.::|..
Mouse    68 LEHRKEYINAYSHTMSDYGRMTDTERDQIDQDAQIFIRTCSEAIHQLRTEAHKEIHSQQVKEHRT 132

  Fly   127 AVLDLLVSYLHSVEQIYLDQKKYRVQHELETYRLLKLAAD---KKKIPVRPAGSNSGKLGRRQVS 188
            ||||.:..||..|.::|.:|:..||:..::..||.||..:   |:|                   
Mouse   133 AVLDFVDDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPEPHTKRK------------------- 178

  Fly   189 NDDSEATKSSSQANGNHDESADNDWNNDAWGDWDEDEEGDEVDDHDGEKGKEANQANQHKPRTRK 253
              ||.:.|:...|:                    :|.|           ||.|.:....||....
Mouse   179 --DSTSEKAPQNAS--------------------QDSE-----------GKPAAEELPEKPLAES 210

  Fly   254 RSKANRSDLNNSSSKMALDEELQQQQEADDDDPLSAEDVQLFEAENVHIYNFLQGVSEEVEQIEK 318
            :                  .||....:...:|.||.|::|:||.||..:...:..:.:||.|||.
Mouse   211 Q------------------PELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEG 257

  Fly   319 NVVDIAQLQDIFTEKVAMQQHNIDRIVSAVVGTTENVKDANEQIRQATQRNAGLRVWSLFFLLVM 383
            .||:|::||:||||||..|:..||.|...|||.|||:|:.||.||:|.:.|||.|||.||||::.
Mouse   258 KVVEISRLQEIFTEKVLQQETEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMC 322

  Fly   384 SFSLLFLDWY 393
            ||||||||||
Mouse   323 SFSLLFLDWY 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syx18NP_524485.1 Syntaxin-18_N 2..90 CDD:287468 33/91 (36%)
SNARE_syntaxin18 306..364 CDD:277203 30/57 (53%)
Stx18NP_081235.2 Syntaxin-18_N 4..96 CDD:287468 33/91 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..50 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..225 18/128 (14%)
SNARE_syntaxin18 245..303 CDD:277203 30/57 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848217
Domainoid 1 1.000 136 1.000 Domainoid score I4925
eggNOG 1 0.900 - - E1_KOG3894
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9655
Inparanoid 1 1.050 183 1.000 Inparanoid score I3950
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55795
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004915
OrthoInspector 1 1.000 - - oto95258
orthoMCL 1 0.900 - - OOG6_103713
Panther 1 1.100 - - LDO PTHR15959
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3600
SonicParanoid 1 1.000 - - X6026
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.