Sequence 1: | NP_651272.1 | Gene: | CG13625 / 42931 | FlyBaseID: | FBgn0039210 | Length: | 647 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_671485.1 | Gene: | Casc3 / 259170 | RGDID: | 628766 | Length: | 699 | Species: | Rattus norvegicus |
Alignment Length: | 587 | Identity: | 110/587 - (18%) |
---|---|---|---|
Similarity: | 183/587 - (31%) | Gaps: | 193/587 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 94 DEIKEEHEESSPATGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRIKQEKRSSSRDL 158
Fly 159 SPARSSKPAKREESPQ-----RGRRRAGSSDQS--PTRRGRDGDQSPPRQKHRDSDQ---SPPRK 213
Fly 214 ARNG--NQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRD----- 271
Fly 272 ---------KDSTPPRR-RKDSDQSPPRRRK---ADDQSPVRRERKDSDQSPPRKRRDNDQSPVR 323
Fly 324 RRRDS----------------------DQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDVDQSP- 365
Fly 366 ---PRRKRDFDQSPTRKRDKSPRRRHDSDQSPARNHRSRERSPPPRNRFKEERKSRWAKASPSKS 427
Fly 428 AS--PPPTHKPKSTKTLDGKKAGLQDAKSLKKETDERRRQEHELFEKMSSEISGRDGDVQVRSTR 490
Fly 491 RKGHRARDAANEDPAEQGRKEEHEKKKKELYDRWGKG---------LKQIEDHKSRLEEMVHEAS 546
Fly 547 KPVARYANDEDLDRHLREQEHADDPMLEYMRQKRKKRDQQDNKPVMPKYEGSFPENRFGIRPGYR 611
Fly 612 WD 613 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG13625 | NP_651272.1 | Bud13 | 490..630 | CDD:286779 | 23/133 (17%) |
Casc3 | NP_671485.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..455 | 87/455 (19%) | |
Necessary for RNA-binding, interaction with MAGOH and localization in nucleus speckles. /evidence=ECO:0000250 | 134..280 | 35/156 (22%) | |||
Sufficient to form the EJC. /evidence=ECO:0000250 | 134..280 | 35/156 (22%) | |||
Btz | 143..245 | CDD:214991 | 22/112 (20%) | ||
Nuclear localization signal 1. /evidence=ECO:0000255 | 201..207 | 2/5 (40%) | |||
Nuclear localization signal 2. /evidence=ECO:0000255 | 251..259 | 5/7 (71%) | |||
Necessary for localization in cytoplasmic stress granules. /evidence=ECO:0000250 | 374..699 | 41/256 (16%) | |||
Nuclear export signal | 458..467 | 2/8 (25%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 577..596 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 629..699 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
0 | 0.000 |