DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13625 and Casc3

DIOPT Version :9

Sequence 1:NP_651272.1 Gene:CG13625 / 42931 FlyBaseID:FBgn0039210 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_671485.1 Gene:Casc3 / 259170 RGDID:628766 Length:699 Species:Rattus norvegicus


Alignment Length:587 Identity:110/587 - (18%)
Similarity:183/587 - (31%) Gaps:193/587 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 DEIKEEHEESSPATGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRIKQEKRSSSRDL 158
            |.:..::|.:..:.|    :|...||:                     :|.|.:|.|...:    
  Rat    85 DAVLSDYESAEDSEG----EEEYSEEE---------------------NSKVELKSEANDA---- 120

  Fly   159 SPARSSKPAKREESPQ-----RGRRRAGSSDQS--PTRRGRDGDQSPPRQKHRDSDQ---SPPRK 213
              |.||...|.||.|:     .|.|::|...:|  |. ..:.|.:.|   ||.|.|:   :|...
  Rat   121 --ADSSAKEKGEEKPESKGTVTGERQSGDGQESTEPV-ENKVGKKGP---KHLDDDEDRKNPAYI 179

  Fly   214 ARNG--NQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRD----- 271
            .|.|  .:..:|.:...::..|:.|..|......|.:.|       :...|:..|:.|::     
  Rat   180 PRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHD-------KFREDEQAPKSRQELIALY 237

  Fly   272 ---------KDSTPPRR-RKDSDQSPPRRRK---ADDQSPVRRERKDSDQSPPRKRRDNDQSPVR 323
                     .|...||| ||....|||:|..   .|..|...|.:......|||...:.:.:...
  Rat   238 GYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGDRSSKSHRHQGPGGNLPPRTFINRNAAGTG 302

  Fly   324 RRRDS----------------------DQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDVDQSP- 365
            |...|                      .|...|.....|.....|.|..:|:|.|.|.....:| 
  Rat   303 RMSTSRNYSRSGGFKEGRTSFRPVEVGGQHGARSGETLKHEANYRSRRLEQTPMRDPSPEPDAPL 367

  Fly   366 ---PRRKRDFDQSPTRKRDKSPRRRHDSDQSPARNHRSRERSPPPRNRFKEERKSRWAKASPSKS 427
               |.::....::|....|.:|         ||.:.      |..:..:...|::|.......|:
  Rat   368 LGSPEKEEVASETPAAVPDITP---------PAPDR------PIEKKSYSRARRTRTKVGDAVKA 417

  Fly   428 AS--PPPTHKPKSTKTLDGKKAGLQDAKSLKKETDERRRQEHELFEKMSSEISGRDGDVQVRSTR 490
            |.  |||:.             ||..|.::.:.|..                :.:.|:.:.....
  Rat   418 AEEVPPPSE-------------GLTSAATVPESTPP----------------AAKTGNWEAPVDS 453

  Fly   491 RKGHRARDAANEDPAEQGRKEEHEKKKKELYDRWGKG---------LKQIEDHKSRLEEMVHEAS 546
            ..|...:|.|..:.|||               .|..|         |:.:.:|       :|..:
  Rat   454 TTGGLEQDVAQLNIAEQ---------------NWSPGQPSFLQPRELRGMPNH-------IHMGA 496

  Fly   547 KPVARYANDEDLDRHLREQEHADDPMLEYMRQKRKKRDQQDNKPVMPKYEGSFPENRFGIRPGYR 611
            .|..::...|::.             ::..|.||....:|...|..|.     |.....|..|:.
  Rat   497 GPPPQFNRMEEMG-------------VQSGRAKRYSSQRQRPVPEPPA-----PPVHISIMEGHY 543

  Fly   612 WD 613
            :|
  Rat   544 YD 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13625NP_651272.1 Bud13 490..630 CDD:286779 23/133 (17%)
Casc3NP_671485.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..455 87/455 (19%)
Necessary for RNA-binding, interaction with MAGOH and localization in nucleus speckles. /evidence=ECO:0000250 134..280 35/156 (22%)
Sufficient to form the EJC. /evidence=ECO:0000250 134..280 35/156 (22%)
Btz 143..245 CDD:214991 22/112 (20%)
Nuclear localization signal 1. /evidence=ECO:0000255 201..207 2/5 (40%)
Nuclear localization signal 2. /evidence=ECO:0000255 251..259 5/7 (71%)
Necessary for localization in cytoplasmic stress granules. /evidence=ECO:0000250 374..699 41/256 (16%)
Nuclear export signal 458..467 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..596
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 629..699
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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