DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13625 and CASC3

DIOPT Version :9

Sequence 1:NP_651272.1 Gene:CG13625 / 42931 FlyBaseID:FBgn0039210 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_031385.2 Gene:CASC3 / 22794 HGNCID:17040 Length:703 Species:Homo sapiens


Alignment Length:461 Identity:110/461 - (23%)
Similarity:159/461 - (34%) Gaps:124/461 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 DDAYENDNLEMDEDLLLGGEDAPQIVGEYIEEDPN---VRSKWRNIAVKDEIKEEHEESSP---- 105
            :|..|.|.:..|.:   ..||:....|||.||:.:   ::|: .|.||....|||..|..|    
Human    80 EDGIEGDAVLSDYE---SAEDSEGEEGEYSEEENSKVELKSE-ANDAVNSSTKEEKGEEKPDTKS 140

  Fly   106 -ATGIRIK---QEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRIKQEKRSSSRDLSPARSSKP 166
             .||.|..   ||..:..:...|:|.......||    .|.:|..|.::......||     ...
Human   141 TVTGERQSGDGQESTEPVENKVGKKGPKHLDDDE----DRKNPAYIPRKGLFFEHDL-----RGQ 196

  Fly   167 AKREESPQRGRRRAGSSDQSPTRRGR-DGDQSPPRQKHRDSDQSPP-------------RKARNG 217
            .:.||...:||:|....|:     || :.|      |.|:.:|:|.             |.|.|.
Human   197 TQEEEVRPKGRQRKLWKDE-----GRWEHD------KFREDEQAPKSRQELIALYGYDIRSAHNP 250

  Fly   218 NQ-SPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQS-----PPRRRRDKDSTP 276
            :. .|.|.|:....|||            :||.:.:..|..:|:..|.     |||...::::..
Human   251 DDIKPRRIRKPRYGSPP------------QRDPNWNGERLNKSHRHQGLGGTLPPRTFINRNAAG 303

  Fly   277 PRRRKDSDQSPPRRR----------------KADDQSPVRRERKDSDQSPPRKRRDNDQSPVRRR 325
            ..|     .|.||..                :|..|...|.......:...|.|| .:|:.||  
Human   304 TGR-----MSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRR-LEQTSVR-- 360

  Fly   326 RDSDQSPPRRRRDDKQTP----PRRRRNSDQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRR 386
               |.||      :...|    |.:...:.:.|...|   |.:||...|     |..|:..|..|
Human   361 ---DPSP------EADAPVLGSPEKEEAASEPPAAAP---DAAPPPPDR-----PIEKKSYSRAR 408

  Fly   387 RHDSDQSPARNHRSRERSPPPRNRFKEERKSRWAKASPSKSASP-PPTHKPKSTKTLDGKKAGL- 449
            |..:....|.. .:.|..|||....         .|.|....:| |||........:|...:|| 
Human   409 RTRTKVGDAVK-LAEEVPPPPEGLI---------PAPPVPETTPTPPTKTGTWEAPVDSSTSGLE 463

  Fly   450 QDAKSL 455
            ||...|
Human   464 QDVAQL 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13625NP_651272.1 Bud13 490..630 CDD:286779
CASC3NP_031385.2 Btz 146..248 CDD:214991 26/121 (21%)
speckle localizer and RNA binding (SELOR) module 170..245 20/94 (21%)
Nuclear localization signal 2. /evidence=ECO:0000255 254..262 3/7 (43%)
Necessary for localization in cytoplasmic stress granules 377..703 28/111 (25%)
Nuclear export signal 462..466 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 492..538
PHA03247 <555..703 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 633..703
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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