DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and Htr3a

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_006243083.1 Gene:Htr3a / 79246 RGDID:61818 Length:488 Species:Rattus norvegicus


Alignment Length:507 Identity:135/507 - (26%)
Similarity:244/507 - (48%) Gaps:68/507 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLCVFLLVPL------------ANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVW 58
            ||.:||.|.:            |:||      ..|...||.|.||:||.:.:|||.:..:...|.
  Rat     9 LLALFLSVLIAQGEGSRRRATQAHST------TQPALLRLSDHLLANYKKGVRPVRDWRKPTLVS 67

  Fly    59 LGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWD 123
            :.:.:..::.|:.||||:||.:|.:|.|.|..|:|.||::..|.:|.:|::.||||||::     
  Rat    68 IDVIMYAILNVDEKNQVLTTYIWYRQFWTDEFLQWTPEDFDNVTKLSIPTDSIWVPDILI----- 127

  Fly   124 GNYEVTLMTKATLKYT-----GEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVD 183
             |..|.:....::.|.     |||....|....::|.:::..||:|.|.|.:.|.||.:....::
  Rat   128 -NEFVDVGKSPSIPYVYVHHQGEVQNYKPLQLVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDIN 191

  Fly   184 LKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFY 248
            :. |.:.|    .:|..|.:.|....||::|.| .||.:|:..:|...::::.|.:.:||:.|||
  Rat   192 IS-LWRTP----EEVRSDKSIFINQGEWELLGV-FTKFQEFSIETSNSYAEMKFYVVIRRRPLFY 250

  Fly   249 TVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLL 313
            .|:|::|.:.|..:.::.|.||.||||:|:..|::|:..:||.:::::.:|.|::..||:|.|.:
  Rat   251 AVSLLLPSIFLMVVDIVGFCLPPDSGERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFV 315

  Fly   314 FTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFL---------------HFMPKLMMMRRT 363
            ..|.|:.:|:..|:.::.:..:......:...:|.|.|               |..|......:|
  Rat   316 VCMALLVISLAETIFIVQLVHKQDLQRPVPDWLRHLVLDRIAWLLCLGEQPMAHRPPATFQANKT 380

  Fly   364 QYTLPDYDDSTPSNGYTNEIDVRDSISDFPSEFKDSQDGAYDNGMQNSVDSDNVIPRNLTPEVLQ 428
                   ||.:.|        :..::.:..|.....||   ......|.||....||..:..|..
  Rat   381 -------DDCSGS--------LLPAMGNHCSHVGSPQD---LEKTSRSRDSPLPPPREASLAVRG 427

  Fly   429 ALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSCVFGTLAII 480
            .|:.:..|...::..|:..|:..||..|..||||....::.|:.:..::.::
  Rat   428 LLQELSSIRHSLEKRDEMREVARDWLRVGYVLDRLLFRIYLLAVLAYSITLV 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 133/501 (27%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 67/222 (30%)
Htr3aXP_006243083.1 LIC 5..482 CDD:273305 135/507 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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