DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and Chrna9

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_075219.2 Gene:Chrna9 / 65024 RGDID:621534 Length:479 Species:Rattus norvegicus


Alignment Length:471 Identity:171/471 - (36%)
Similarity:265/471 - (56%) Gaps:42/471 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDP 95
            ::|:.||..:|:..:|||.:....|.|.|.:.|||:.:::.:||::|..||::|.|.|..|.||.
  Rat    32 QKLFSDLFEDYSSALRPVEDTDAVLNVTLQVTLSQIKDMDERNQILTAYLWIRQTWHDAYLTWDR 96

  Fly    96 EEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEY 160
            ::|..::.:.:||:.:|.|||||||..|......:.|...|:|.|.:.|:.|||.||||.::|.|
  Rat    97 DQYDRLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYDGLITWDSPAITKSSCVVDVTY 161

  Fly   161 FPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYY 225
            ||:|.|.|.:.||||||||.|||:        .|.:..| ||::|...|||::..:||.||...|
  Rat   162 FPFDSQQCNLTFGSWTYNGNQVDI--------FNALDSG-DLSDFIEDVEWEVHGMPAVKNVISY 217

  Fly   226 PDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTVF 290
            ....||:.|:||.|.::|::.||.|||::|||.::||..|.||||:.|||||:|.::||:::|||
  Rat   218 GCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVF 282

  Fly   291 FLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMP 355
            .|::|||: |.|..|||:|||.:.||.|::.|...|:.|:||||.......:....:.:.|.:|.
  Rat   283 QLMVAEIM-PASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAKVVILKYMS 346

  Fly   356 KLMMMRRTQYTLPDYDDSTPSNGYTNEID-VRDSISDFP-SEFKDSQ----------------DG 402
            :::.:.       |..:|..|..::.|.: |....|..| |..|.|:                |.
  Rat   347 RILFVY-------DVGESCLSPRHSQEPEQVTKVYSKLPESNLKTSRNKDLSRKKEVRKLLKNDL 404

  Fly   403 AYDNGMQNSVDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWL 467
            .|..|:..:.||.......||       :.:.:||:.:||....|....:||.|:.|:||||:|:
  Rat   405 GYQGGIPQNTDSYCARYEALT-------KNIEYIAKCLKDHKATNSKGSEWKKVAKVIDRFFMWI 462

  Fly   468 FTLSCVFGTLAIICQS 483
            |.......|:.||.::
  Rat   463 FFAMVFVMTVLIIARA 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 169/465 (36%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 86/215 (40%)
Chrna9NP_075219.2 LIC 8..474 CDD:273305 169/465 (36%)
LGIC_ECD_nAChR_A9 31..237 CDD:349823 86/213 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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