DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and lgc-24

DIOPT Version :10

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_001123110.2 Gene:lgc-24 / 6418837 WormBaseID:WBGene00045385 Length:389 Species:Caenorhabditis elegans


Alignment Length:359 Identity:74/359 - (20%)
Similarity:132/359 - (36%) Gaps:80/359 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 RLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPE 96
            :|..||..|||..:  .|...|.|.....|::..:..::..:..|:..:..:..|.|.:|:|:|.
 Worm    30 KLRSDLFKNYNGSM--PVGKGEYLEATPSLEVGFIHFIDDDHGFMSVVINAELTWIDERLKWNPA 92

  Fly    97 EYGGVEQL------YVPSEHIWVPDIVLYNNWDGNY-EVTLM----TKATLKYTGEVFWEPPAIY 150
            .|.||.::      :....:.|:| ||.|.::|..| |:.|:    .:..:.|.||:......:.
 Worm    93 NYSGVREIVEKTFEFRKDNNCWMP-IVKYRSYDRRYSELDLLEFSDARTLISYKGEIKTALQTMV 156

  Fly   151 KSSCEMNVEYFPYDEQICFM----------------------KFGSWTYNGAQVDLKHLDQIPGS 193
            .:.|:.:...:|.|.|.|.:                      ||.:..:...:|...||      
 Worm   157 TTKCQFSFGEYPNDYQNCSIMLIPNQNADEFRFVSPNGYCNPKFENLEHRAVRVHDLHL------ 215

  Fly   194 NLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVA 258
                :|::...||............| ..||...|     :..|.|..:|......|.|.:|.:.
 Worm   216 ----MGVESNIFYTFANTYFTAEEVT-GFEYMAKT-----EFRFNLMFKRVNKLLNVKLSIPSIL 270

  Fly   259 LTFLTVLVFYLPSDSGEKVTLCISILVSLTVFF------LLLAEIIPPTSLAVPLLGKY-LLFTM 316
            ::...::....|:.        .||......||      |.:::|:|.....:|..|.. |.|.:
 Worm   271 ISMFLIIAGLFPNG--------YSIFGYAYCFFVEVMHGLYVSKILPNDIRGIPYHGALALCFLI 327

  Fly   317 ILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLF 350
            ..|.|..|.   |.:::.|:          :|||
 Worm   328 ETVFLFCWK---VFSVYARN----------QKLF 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:455710 74/359 (21%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 51/247 (21%)
Cys-loop 154..168 CDD:349832 4/13 (31%)
lgc-24NP_001123110.2 LGIC_ECD 62..226 CDD:475126 34/174 (20%)

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