Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005169811.1 | Gene: | chrnb2 / 561906 | ZFINID: | ZDB-GENE-070821-3 | Length: | 543 | Species: | Danio rerio |
Alignment Length: | 549 | Identity: | 224/549 - (40%) |
---|---|---|---|
Similarity: | 322/549 - (58%) | Gaps: | 96/549 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 WSLLCVFLLVPLANSTAPISFEANPDT-KRLYDDLL--SNYNRLIRPVVNNTETLTVWLGLKLSQ 65
Fly 66 LIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTL 130
Fly 131 MTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNL 195
Fly 196 VQVGI-DLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVAL 259
Fly 260 TFLTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVW 324
Fly 325 TTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYT----------------------- 366
Fly 367 ---------LPDYDDSTPSNG-----YTNEIDVRDSISDFPSEF---------KDSQDGAYDNGM 408
Fly 409 QNSVDSDN-----VIPRN-------LTPEVL--------QALRAVRFIAQHIKDADKDNEIVEDW 453
Fly 454 KFVSMVLDRFFLWLFTLSCVFGTLAIICQ 482 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 220/539 (41%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 99/221 (45%) | ||
chrnb2 | XP_005169811.1 | LIC | 4..526 | CDD:273305 | 223/546 (41%) |
Neur_chan_LBD | 23..228 | CDD:280998 | 96/217 (44%) | ||
Neur_chan_memb | 235..525 | CDD:280999 | 115/293 (39%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |